| Protein: | CE21988 |
| Organism: | Caenorhabditis elegans |
| Length: | 434 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21988.
| Description | E-value | Query Range |
Subject Range |
|
|
311.0 | [0..3] | [433..43] |
|
Region A: Residues: [1-211] |
1 11 21 31 41 51
| | | | | |
1 MATSFYTGGG EDGDGFNPRV HARIAEREGF QLASGSEDPR TLFVANLDPA ITDEFLATLF 60
61 NQIGAVMKAK IIFEGLNDPY AFVEFSDHNQ ATLALQSHNG RELLEKEMHV TWAFEPREPG 120
121 ENRSKPETSR HFHVFVGDLC SEIDSTKLRE AFVKFGEVSE AKIIRDNNTN KGKGYGFVSY 180
181 PRREDAERAI DEMNGAWLGR RTIRTNWATR K
|
| Detection Method: |  |
| Confidence: | 47.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.60920363363072 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [212-341] |
1 11 21 31 41 51
| | | | | |
1 PDEDGERGGD RGDRRGGGGG GRDRYHNQSE KTYDEIFNQA AADNTSVYVG NIANLGEDEI 60
61 RRAFDRFGPI NEVRTFKIQG YAFVKFETKE SAARAIVQMN NADIGGQIVR CSWGKSGDSG 120
121 KPSERGSGGG
|
| Detection Method: | |
| Confidence: | 4.53 |
| Match: | 2bz2A |
| Description: | No description for 2bz2A was found. |
| Term | Confidence | Notes |
| RNA binding | 4.74219150342477 | bayes_pls_golite062009 |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| mRNA binding | 3.63162433534903 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| 2.38034004712143 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.08300488237934 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.960399311787502 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.462558743683805 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
|
Region A: Residues: [342-434] |
1 11 21 31 41 51
| | | | | |
1 GGSGNYGYGY GNSGGGGGSG GPGNSQFSNF NQRPPPSGNG GSGGGSGGQN NQYWQYYSQY 60
61 YNNPHLMQQW NNYWQKDGPP PPPAAAASST GGN
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
