| Protein: | ast-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 377 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ast-1.
| Description | E-value | Query Range |
Subject Range |
|
|
232.0 | [0..25] | [327..254] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MQVVSSATLP PTVASADLAI VGGRSSDEDV IKYSAIQTIK QEQQQQQQQQ SNTALPSYNF 60
61 PFFNGMQNDF PPNRMLYNDN TMQKSENDHF TGMNLSTSAS SSGNSTSSKD QSRRQFYTES 120
121 SNSSGNGAAA TSGSNGSSSS TESKSDVFNI SMNAFAATPG SKSEDHNIPS FNMLSSYYTG 180
181 ALK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [184-377] |
1 11 21 31 41 51
| | | | | |
1 LSNSTSFANP DPYQILGPTS KNLAHSGSGQ TQLWQFLLEL LSDKRYSEVI TWEGTQGEFK 60
61 LVDPDEVARK WGERKSKPNM NYDKMSRALR YYYDKNIMAK VHGKRYAYKF DFQGIAQALQ 120
121 PPTASHPQDY FNSHAMGRIA PDFSSWTSAN YRSLNIAGFN NGSTIFNPSV NYSAFGATGT 180
181 SNNLSAARAF PLYR
|
| Detection Method: | |
| Confidence: | 40.221849 |
| Match: | 1fliA |
| Description: | Fli-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.75235002882976 | bayes_pls_golite062009 |
| transcription regulator activity | 1.40837731591833 | bayes_pls_golite062009 |
| DNA binding | 1.24351754120608 | bayes_pls_golite062009 |
| nucleic acid binding | 1.06033428483031 | bayes_pls_golite062009 |
| transcription factor activity | 0.76402352618699 | bayes_pls_golite062009 |
| protein binding | 0.058151715836892 | bayes_pls_golite062009 |
