| Protein: | daf-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 627 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for daf-5.
| Description | E-value | Query Range |
Subject Range |
|
|
649.0 | [0..1] | [627..1] |
|
Region A: Residues: [1-222] |
1 11 21 31 41 51
| | | | | |
1 MSDSPIGSSQ QVEPEHRTPD LMDIDPLIAN LKALHEETRS DDDDDGQPST SAKRKDSRAD 60
61 GIVIHQKKYS DPGRFLWIWL LGVRVPALSI DGEPHLPIEI LDDMLTKKDK KDQMSFQNLL 120
121 RYKNVYIRMA SPSQFRAVME KSKECENLNI TSLSLMSRSD IERIMGELRL ESMLTLAEHD 180
181 NWDISDRVHV VHVNFIDYCS EWLESDDLEE DVMQSGTHGY WY
|
| Detection Method: |  |
| Confidence: | 1.0 |
| Match: | 1l8rA |
| Description: | Retinal determination protein Dachshund |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.15084451351262 | bayes_pls_golite062009 |
| DNA binding | 1.89121395172205 | bayes_pls_golite062009 |
| nucleic acid binding | 1.85709490142946 | bayes_pls_golite062009 |
| transcription factor activity | 1.63947569382682 | bayes_pls_golite062009 |
| binding | 1.25832675558318 | bayes_pls_golite062009 |
| transcription repressor activity | 0.602655539932971 | bayes_pls_golite062009 |
|
Region A: Residues: [223-312] |
1 11 21 31 41 51
| | | | | |
1 KNRRNMRCIE CQHCEGKFTP TDFIMHHHYP IKPSGFVHTG CNSFQWIRLI EVFDKSNENL 60
61 EAWNKFVLNS HRAGKREYDE AAPHQAPPKR
|
| Detection Method: | |
| Confidence: | 1.93 |
| Match: | 1mr1C |
| Description: | SMAD4-binding domain of oncoprotein Ski |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.83423962165591 | bayes_pls_golite062009 |
| binding | 1.34661437993129 | bayes_pls_golite062009 |
| nucleic acid binding | 0.859383583344931 | bayes_pls_golite062009 |
| DNA binding | 0.736673094382699 | bayes_pls_golite062009 |
| protein binding | 0.531073393510436 | bayes_pls_golite062009 |
| transcription factor activity | 0.40038585689413 | bayes_pls_golite062009 |
| transcription repressor activity | 0.183703906743894 | bayes_pls_golite062009 |
|
Region A: Residues: [313-374] |
1 11 21 31 41 51
| | | | | |
1 PAMETPVPVA ADNGWEADEE EEGEEIVDRD ADIEKCKLRN KKKMENLHIA DFLGPSGSKG 60
61 LK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [375-627] |
1 11 21 31 41 51
| | | | | |
1 PRNKFEAVII EQLNKMDDAA LEALFLKSPE EYNLWVKESD FTHKVVTQQQ EWKAKMKDPN 60
61 FKSRASANFD VSKGEFDNMR HFDNASKATR QEIQQLAEQF ANLDRDAKLL TPMEFVLREH 120
121 ALLKNVSADA IRVLCNRPPL PPLPPPPPPP KPKPAPVQPI SLGNINFVAL AQQLIASGIK 180
181 LPLPIVTPPV VSTPAPVITP IPAALPISPN SDFLKQQLST AMSSPALLSL YPKLTAGAYE 240
241 QLAQFIKTTT VKN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
