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View Structure Prediction Details

Protein: pgl-3
Organism: Caenorhabditis elegans
Length: 693 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgl-3.

Description E-value Query
Range
Subject
Range
pgl-1 - status:Partially_confirmed UniProt:Q304E5 protein_id:ABB51171.1
851.0 [0..1] [622..42]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANKRQIVE VDGIKSYFFP HLAHYLASND ELLVNNIAQA NKLAAFVLGA TDKRPSNEEI  60
   61 AEMILPNDSS AYVLAAGMDV CLILGDDFRP KFDSGAEKLS QLGQAHDLAP IIDDEKKISM 120
  121 LARKTKLKKS NDAKILQVLL KVLGAEEAEE KFVELSELSS ALDLDFDVYV LAKLLGFASE 180
  181 ELQEEIEIIR DNVTDAFEAC KPLLKKLMIE GPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDSVDPFTQL LLTPQEESIE KAVSHIVARF EEASAVEDDE SLVLKSQLGY QLIFLVVRSL  60
   61 ADGKRDASRT IQSLMPSSVR AEVFPGLQRS VFKSAVFLAS HIIQVFLGSM KSFEDWAFVG 120
  121 LAEDLESTWR RRAIAELLKK FRISVLEQCF SQPIPLLPQS ELNNETVIEN VNNALQFALW 180
  181 ITEFYGSESE KKSLNQLQFL SPKSKNLLVD SFKKFAQGLD SKDHVNRIIE SLEKSSSSEP 240
  241 SATAKQTTTS NGPTTVSTAA QVVTVEKMPF SRQTIPCEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [493-693]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDLANVLNSA KIIGESVTVA AHDVIPEKLN AEKNDNTPST ASPVQFSSDG WDSPTKSVAL  60
   61 PPKISTLEEE QEEDTTITKV SPQPQERTGT AWGSGDATPV PLATPVNEYK VSGFGAAPVA 120
  121 SGFGQFASSN GTSGRGSYGG GRGGDRGGRG AYGGDRGRGG SGDGSRGYRG GDRGGRGSYG 180
  181 EGSRGYQGGR AGFFGGSRGG S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

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Created and Maintained by: Michael Riffle