| Protein: | nhr-112 |
| Organism: | Caenorhabditis elegans |
| Length: | 342 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-112.
| Description | E-value | Query Range |
Subject Range |
|
|
252.0 | [0..1] | [341..207] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MCKICGSSES EPHFGGTSCR ACAAFFRRFY HSKKLGLKCT CKTRQSNAHP CRSCRIRKCY 60
61 EAGMTPEKIQ LTRDKHLNRT
|
| Detection Method: |  |
| Confidence: | 15.0 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [81-342] |
1 11 21 31 41 51
| | | | | |
1 IKLEGPCSSL DTPITSRQTP NLYCVLSNWH ELKMTREEMN SGSLNNCNIF ELTSFVLRDL 60
61 ELTWRMVSKA FPTVEVLEDR DRQALLRNFV PKLWQIEPIL EYRECAEKFD NLEEEDYENL 120
121 LVGFYGGTFP EGKEMSKSEI VSNFRPYWDY YYTKMILPIS SMGLEELEYM AIVWLAFFDN 180
181 GYSNISDNCL EMCRDIQKVI LKELRNYQID RNFHENRFFV ALEALQIIER GEKKFMEEML 240
241 VCEMNHIRIH DDFRKIIREP KL
|
| Detection Method: | |
| Confidence: | 38.30103 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| signal transducer activity | 0.875578759851886 | bayes_pls_golite062009 |
| molecular transducer activity | 0.875578759851886 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
