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View Structure Prediction Details

Protein: CE15875
Organism: Caenorhabditis elegans
Length: 508 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15875.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
272.0 [0..3] [504..693]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRGNNDFV EEKCAPVRRG AGPPKNVAAP LPIELKPKFP KTEESAVPAE LAHTPQTPVE  60
   61 QVPAAQSAIV EAPVVSKTLE TEINEAPGEA VVVEAGQQQE GGGSQLQEVP SNDADKADQQ 120
  121 QKKKKKAKKP AKKDTGTAVA VFISDDEDKK DDPNNAVGQF VEDDDDDKKK NKKKEKKERI 180
  181 KTLEKDDNKA KDAKGPSKVK KEKLQKTDRG SARQKTKTG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSNRQKRQQG SVRRSAAAKP ENATPVATTP QVPTGKNYVP LQNIATTLPQ PPPAKDKNKA  60
   61 PSKDATEGLL KSWISKAKQK YVGKNPNIES STLNGDDSII APEQANIKPE ITAVYGLPCD 120
  121 YAPKTMPTNK DDKSHPEKLF PGGRPFWMSN NGKPPPAKVI TVKDAVDLCT SGKLKFLERQ 180
  181 TDAPED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [406-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNPYSEDLQA ICAKDKEFFS DYKRIWTNTL YNLNPLPTDA KDRPDPKSTK PVSFKLPTTT  60
   61 TVYKRRVQSE AQKVTTVTFQ PTPKGQKMKK KKSSPSNSSA TVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle