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View Structure Prediction Details

Protein: CE15875
Organism: Caenorhabditis elegans
Length: 508 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15875.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
272.0 [0..3] [504..693]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRGNNDFV EEKCAPVRRG AGPPKNVAAP LPIELKPKFP KTEESAVPAE LAHTPQTPVE  60
   61 QVPAAQSAIV EAPVVSKTLE TEINEAPGEA VVVEAGQQQE GGGSQLQEVP SNDADKADQQ 120
  121 QKKKKKAKKP AKKDTGTAVA VFISDDEDKK DDPNNAVGQF VEDDDDDKKK NKKKEKKERI 180
  181 KTLEKDDNKA KDAKGPSKVK KEKLQKTDRG SARQKTKTG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSNRQKRQQG SVRRSAAAKP ENATPVATTP QVPTGKNYVP LQNIATTLPQ PPPAKDKNKA  60
   61 PSKDATEGLL KSWISKAKQK YVGKNPNIES STLNGDDSII APEQANIKPE ITAVYGLPCD 120
  121 YAPKTMPTNK DDKSHPEKLF PGGRPFWMSN NGKPPPAKVI TVKDAVDLCT SGKLKFLERQ 180
  181 TDAPED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [406-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNPYSEDLQA ICAKDKEFFS DYKRIWTNTL YNLNPLPTDA KDRPDPKSTK PVSFKLPTTT  60
   61 TVYKRRVQSE AQKVTTVTFQ PTPKGQKMKK KKSSPSNSSA TVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle