| Protein: | ndx-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 365 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ndx-1.
| Description | E-value | Query Range |
Subject Range |
|
|
270.0 | [0..1] | [338..1] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MPLGKLDLVE EEYIAESGDH TPEASRLMGN GDSVVENLNG HTNGAVAKKK NEPRVPDMQL 60
61 GKCRYVRLHD
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [71-365] |
1 11 21 31 41 51
| | | | | |
1 NVNYVAAAII LRNQGDDTEV LLIQEAKKSC RGKWYMPAGR VEAGETIEEA VVREVKEETG 60
61 YSCDVVELLS LQVQGSGWYR YAFYCNITGG DLKTEPDQES LAAEWYNIKD LKANKVQLRG 120
121 RDFIRLVDEA VTYRTHGPVD SIPRVMPLNQ NVAGLFLEFM IVKHSRDGLR TEVLVHKSIK 180
181 DETYLLEEEQ PFPTVEFGFE YFFAMVVSKC YRHLLEEGAN VVFTPSHVTR IKCHPKPMES 240
241 LAHGVSIRVY CEHKQSASKA IIRSPRYHWI SVESPETRQR FHMAQKQFRP SLHML
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 2fb1A |
| Description: | Crystal structure of Hypothetical protein BT0354 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
