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Protein Overview: ndx-1

General Information:
Name(s) found: ndx-1 / CE14186 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00003578 locus:ndx-1 Putative nudix hydrolase 1 status:Confirmed UniProt:O45830 protein_id:CAB04835.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 365 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEALink to PubMed article]
    Molecular Function: hydrolase activity [IEALink to PubMed article]
    8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLGKLDLVE EEYIAESGDH TPEASRLMGN GDSVVENLNG HTNGAVAKKK NEPRVPDMQL  60
   61 GKCRYVRLHD NVNYVAAAII LRNQGDDTEV LLIQEAKKSC RGKWYMPAGR VEAGETIEEA 120
  121 VVREVKEETG YSCDVVELLS LQVQGSGWYR YAFYCNITGG DLKTEPDQES LAAEWYNIKD 180
  181 LKANKVQLRG RDFIRLVDEA VTYRTHGPVD SIPRVMPLNQ NVAGLFLEFM IVKHSRDGLR 240
  241 TEVLVHKSIK DETYLLEEEQ PFPTVEFGFE YFFAMVVSKC YRHLLEEGAN VVFTPSHVTR 300
  301 IKCHPKPMES LAHGVSIRVY CEHKQSASKA IIRSPRYHWI SVESPETRQR FHMAQKQFRP 360
  361 SLHML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] MSA 1.899995 View MSA. No confident structure predictions are available.
    2 View Details [71..365] PSI-BLAST 32.39794 Crystal structure of Hypothetical protein BT0354

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle