| Protein: | gad-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 620 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gad-1.
| Description | E-value | Query Range |
Subject Range |
|
|
627.0 | [0..2] | [613..1183] |
|
Region A: Residues: [1-505] |
1 11 21 31 41 51
| | | | | |
1 MDDNTAPKKN SEKKARVFDL QAMFAQTISN APRTEEPTHV PQSVSVSSKS ESGVSSSAVS 60
61 DDEDDFMPDL PPGFQMQQSE AGPSSSRAEG PEDSDDSDFD ETEAISIIKL IPAACEAKIS 120
121 HGTQAISALR VEPPGVRFAS GGLDYYVKLF DFQKMDMSMR YDKELLPAES HVINSLAFSP 180
181 NGETLVVASG EAIIRLLDRA GKQWSETVRG DQYIIDLNIT KGHTATVNCV EFNPLNKNEF 240
241 ISCSDDGSLR LWNLDDHKVI TKCINKHRKV IKTKGANGKR VSPQVCTFSP DGKWIAAGCD 300
301 DGSVQAWKYG SQYVNVNYLV RKAHNGSITS IAFSPDSKRL LSRGFDDTLK MWSLDNPKEP 360
361 LLVKTGLENA FKSTDCGFSP RAEVVFTGTS SPNKDTPGTL QFFDPMTFDL VYKIDYPGIS 420
421 CHRIQWHPRL NQIIAGLSDG TIHVYYDQTM SQRGVMSCVT KPLKRNRASE VVREDMVLSP 480
481 LSLEMFQPRG EEGEEKEVTG WRIKK
|
| Detection Method: |  |
| Confidence: | 56.0 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| dynactin binding | 1.99805820148456 | bayes_pls_golite062009 |
| binding | 1.99637157021613 | bayes_pls_golite062009 |
| chromatin binding | 1.47324631246337 | bayes_pls_golite062009 |
| RNA binding | 1.47267432096753 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| transporter activity | 0.692270256454453 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.485054404024611 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| molecular transducer activity | 0.367729389382533 | bayes_pls_golite062009 |
| signal transducer activity | 0.367729389382533 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 0.231534552000461 | bayes_pls_golite062009 |
| 0.13154833491231 | bayes_pls_golite062009 | |
| substrate-specific transporter activity | 0.121183207943714 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| myosin II binding | 0.0145748031956598 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [506-620] |
1 11 21 31 41 51
| | | | | |
1 YLRMQDNKLR PEFRKPADMP INGKSANGRV AASGGSLHSY LAKQIGTARN AEFLKDTDVR 60
61 ASILKHAKDA EENPLYIDKA YRKTQPKKIF QETAVEPEDQ DDEELQPVFK MPRTK
|
| Detection Method: | |
| Confidence: | 22.69897 |
| Match: | 2pm9A |
| Description: | No description for 2pm9A was found. |
