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View Structure Prediction Details

Protein: CE13275
Organism: Caenorhabditis elegans
Length: 303 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13275.

Description E-value Query
Range		 Subject
Range
gi|50729140 - gi|50729140|ref|XP_416445.1| PREDICTED: similar to cytochrome b-5 reductase [Gallus gallus]
 279.0 [0..7] [303..5]

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Predicted Domain #1
Region A:
Residues: [1-303] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENNTLAIT GGVVLISSVS LFLYLRQLRA EKKSKRTLED DSVKYLLPLI EKFEISHNTR  60
   61 KFRFGLPSKD HILGLPIGHH VYLSANIGGK LIVRSYTPVS CDLDLGYVDL MVKVYFKNTH 120
  121 ERFPDGGKMS QHLESLKIGD TVSFRGPHGS IIYKGSGLFT VRMDKKAEPK NRFFKHLSMI 180
  181 AGGTGITPML QVIAAILRDP IDATQIRLLF ANQTEDDILC RKELDELAEK HPTRFRVWYT 240
  241 VSKASKDWRY STGHINEEMI KEHLFPSNEE SAVLLCGPPA MINCACIPNL DKLGHNSENY 300
  301 LIF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.69897
Match: 1ndhA
Description: CRYSTAL STRUCTURE OF NADH-CYTOCHROME B5 REDUCTASE FROM PIG LIVER AT 2.4 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 5.12164086042432 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 4.82719560919736 bayes_pls_golite062009
NADH dehydrogenase activity 4.10258111244259 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 3.98767523940821 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 3.81212227280399 bayes_pls_golite062009
coenzyme binding 3.33805077160148 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor 3.111558299994 bayes_pls_golite062009
oxidoreductase activity 3.02740987944465 bayes_pls_golite062009
FAD binding 2.07600122867642 bayes_pls_golite062009
arginine binding 1.58854105635357 bayes_pls_golite062009
cytochrome-b5 reductase activity 1.5685421124725 bayes_pls_golite062009
binding 1.56341797572673 bayes_pls_golite062009
ferredoxin reductase activity 1.46342400843015 bayes_pls_golite062009
ferredoxin-NADP+ reductase activity 1.46342400843015 bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor 1.46342400843015 bayes_pls_golite062009
catalytic activity 1.45374095556065 bayes_pls_golite062009
tetrahydrobiopterin binding 1.29331444558985 bayes_pls_golite062009
NADP or NADPH binding 1.18833847639357 bayes_pls_golite062009
demethylase activity 1.1768217851058 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 0.90349352746963 bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors 0.73475657802914 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
FMN binding 0.649158247260553 bayes_pls_golite062009
riboflavin synthase activity 0.380537461428523 bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 0.33163571415742 bayes_pls_golite062009
cofactor binding 0.205324283520452 bayes_pls_golite062009
protein binding 0.144900113694048 bayes_pls_golite062009
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