YRC Public Data Repository - Protein Structure Prediction

Protein:	exos-3
Organism:	Caenorhabditis elegans
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for exos-3.

Description	E-value	Query Range	Subject Range
gi\|157746817 - gi\|157746817\|ref\|XP_001668504.1\| Hypothetical protein CBG02224 [Caenorhabditis briggsae AF16] gi\|39580787, gi\|... - gi\|39580787\|emb\|CAE58956.1\| Hypothetical protein CBG02224 [Caenorhabditis briggsae], gi\|187037594\|em...	224.0	[0..1]	[225..1]
gi\|115931781, gi... - gi\|115931781\|ref\|XP_001179370.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	213.0	[0..2]	[209..11]
gi\|73967942 - gi\|73967942\|ref\|XP_850770.1\| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA p...	210.0	[0..3]	[224..26]
gi\|15010706, gi\|... - gi\|23308267\|gb\|AAN18103.1\| At2g25350/F13B15.1 [Arabidopsis thaliana], gi\|20198061\|gb\|AAM15377.1\| Exp...	210.0	[0..4]	[226..17]
RRP4_PYRFU - Exosome complex component Rrp4 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1... ECR1_PYRFU - Probable exosome complex RNA-binding protein 1 OS=Pyrococcus furiosus GN=PF1569 PE=3 SV=1	210.0	[0..3]	[226..11]
gi\|220952144 - gi\|220952144\|gb\|ACL88615.1\| CG31938-PA [synthetic construct] Rrp40-PA, FBpp03... - This gene is referred to in FlyBase by the symbol Dmel\Rrp40 (CG31938, FBgn0260648). It is a protein...	209.0	[0..2]	[205..6]
gi\|116118540, gi... - gi\|119114696\|ref\|XP_319438.3\| AGAP010247-PA [Anopheles gambiae str. PEST], gi\|116118540\|gb\|EAA43646.... AGAP010247-PA - exosome complex component RRP40\|protein_coding\|3R:51649377:51650093:-1\|gene:AGAP010247	207.0	[0..4]	[210..10]
gi\|125572934, gi... - gi\|57899790\|dbj\|BAD87535.1\| ALM beta-like [Oryza sativa Japonica Group], gi\|215768884\|dbj\|BAH01113.1...	206.0	[0..4]	[225..16]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVYLPGDVI NEPSSSDSSI IGYGISVRGQ TRIATQPGAF HNDDGKVWLN VHSKRYIPQE  60
   61 GDRVIAIVTS KTGDFFRLDI GTAEYAMINF TNFEGATKRN RPNLKTGDII YATVFDTTPR 120
  121 TEAELTCVDD EKRARGMGQL NGGFMFKVSL NHCRRLINPS CKILQTVGKF FKFEITVGMN 180
  181 GRIWISASTS DDIIKIHDII NKSEFITDED ELITLVQNNY TRSVSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	2nn6G
Description:	No description for 2nn6G was found.

Predicted functions:

Term	Confidence	Notes
binding	1.68323473451419	bayes_pls_golite062009
nucleic acid binding	0.850020261215126	bayes_pls_golite062009
protein binding	0.469863842628997	bayes_pls_golite062009
RNA binding	0.0954653278078664	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: