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View Structure Prediction Details

Protein: rhr-1
Organism: Caenorhabditis elegans
Length: 463 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhr-1.

Description E-value Query
Range
Subject
Range
gi|47214541 - gi|47214541|emb|CAG04561.1| unnamed protein product [Tetraodon nigroviridis]
360.0 [0..3] [456..5]

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Predicted Domain #1
Region A:
Residues: [1-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPLHQNQL TLILGLFQVV FLVIFALYGS YDASALPSET KNVEEAARMT NLYPLFQDTH  60
   61 VMIFIGFGFL MTFLKRYGFS AVSINMLLAV FTIQWGIIVR GMASAHHGFK FTISLEQLLT 120
  121 ADFAAAVILI SMGAMLGKLS PSQYVIMAFF ETPVALIVEH ICVHNLQIND VGGSIIVHAF 180
  181 GAYFGLACAK GFGKKEQRGH TNEGSTYHTD IFAMIGAIFL WIYWPSFNAA VAATDDARQR 240
  241 AVANTFLSLC ACTMTTFLVS QAVDKHKRFD MVHIANSTLA GGVAIGTTAN VVLEPYHAMI 300
  301 IGVIAGAVSV IGYKYITPFL SEKLGIHDTC GVNNLHGMPG LIAGFASIAF LFIYDETRYP 360
  361 AQYDKIYPGM ARGEDRTRMF DEKTQALNQL MAIGLVFLAS TVSGYLTGLL LKLKIWDQVR 420
  421 DDEYYADGDY FETPGDYDFT SRIVTSVKQI EVAEYNPLSQ KEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.09691
Match: 2ns1A
Description: No description for 2ns1A was found.

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
methylammonium transmembrane transporter activity 4.84543781800962 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 1.02646024539252 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle