YRC Public Data Repository - Protein Structure Prediction

Protein:	cdd-1
Organism:	Caenorhabditis elegans
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdd-1.

Description	E-value	Query Range	Subject Range
gi\|71740152, gi\|... - gi\|71839337\|ref\|ZP_00679087.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Pelobacter p...	166.0	[0..1]	[154..4]
gi\|37527198, gi\|... - gi\|37527198\|ref\|NP_930542.1\| tRNA-specific adenosine deaminase [Photorhabdus luminescens subsp. laum...	159.0	[0..11]	[154..6]
gi\|78043781, gi\|... - gi\|78043781\|ref\|YP_361468.1\| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus hyd...	159.0	[0..10]	[155..1]
gi\|74313082, gi\|... - gi\|74313082\|ref\|YP_311501.1\| tRNA-specific adenosine deaminase [Shigella sonnei Ss046], gi\|73856559\|...	158.0	[0..6]	[155..13]
TADA_SHIFL - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Shigella flexneri gi\|218352918, gi... - gi\|218696186\|ref\|YP_002403853.1\| tRNA-specific adenosine deaminase [Escherichia coli 55989], gi\|2183... gi\|24113886, gi\|... - gi\|24113886\|ref\|NP_708396.1\| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301], gi\|2... gi\|218361852, gi... - gi\|218555084\|ref\|YP_002387997.1\| tRNA-specific adenosine deaminase [Escherichia coli IAI1], gi\|21836... gi\|254289295, gi... - gi\|254289295\|ref\|YP_003055043.1\| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)], gi\|... gi\|218547914, gi... - gi\|218547914\|ref\|YP_002381705.1\| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 3546... YFHC_ECOLI, TADA... - (P30134) Hypothetical protein yfhC, tRNA-specific adenosine deaminase (EC 3.5.4.-) - Escherichia col... gi\|209920038, gi... - gi\|209920038\|ref\|YP_002294122.1\| tRNA-specific adenosine deaminase [Escherichia coli SE11], gi\|20991... gi\|30042202, gi\|... - gi\|30063946\|ref\|NP_838117.1\| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T], gi... gi\|82545011, gi\|... - gi\|82545011\|ref\|YP_408958.1\| tRNA-specific adenosine deaminase [Shigella boydii Sb227], gi\|81246422\|... gi\|1788911, gi\|1... - gi\|1788911\|gb\|AAC75612.1\| tRNA-specific adenosine deaminase [Escherichia coli K12], gi\|16130484\|ref\|... gi\|85675450, gi\|... - gi\|89109365\|ref\|AP_003145.1\| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. W... gi\|157067716, gi... - gi\|157162036\|ref\|YP_001459354.1\| tRNA-specific adenosine deaminase [Escherichia coli HS], gi\|1570677... gi\|1033148\|gb\|AA... - alternate name yfhC; orf178 of GenBank Accession Number X72336 gi\|188491218, gi... - gi\|188496019\|ref\|ZP_03003289.1\| tRNA-specific adenosine deaminase [Escherichia coli 53638], gi\|18849... gi\|187427445, gi... - gi\|187730453\|ref\|YP_001881338.1\| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94], gi... gi\|253974435, gi... - gi\|254162534\|ref\|YP_003045642.1\| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606],... gi\|251785887, gi... - gi\|251785887\|ref\|YP_003000191.1\| hypothetical protein B21_02417 [Escherichia coli BL21], gi\|24237816...	158.0	[0..6]	[155..13]
gi\|84376970, gi\|... - gi\|84388906\|ref\|ZP_00991114.1\| Cytosine/adenosine deaminase [Vibrio splendidus 12B01], gi\|84376970\|g...	157.0	[0..3]	[154..1]
gi\|227532643, gi... - gi\|227532643\|ref\|ZP_03962692.1\| tRNA-adenosine deaminase [Lactobacillus reuteri MM4-1A], gi\|22719273... gi\|227363478, gi... - gi\|227363478\|ref\|ZP_03847600.1\| tRNA-adenosine deaminase [Lactobacillus reuteri MM2-3], gi\|227071492... gi\|89079584, gi\|... - gi\|89090584\|ref\|ZP_01163629.1\| cytosine/adenosine deaminase [Lactobacillus reuteri JCM 1112], gi\|890...	156.0	[0..1]	[155..1]
gi\|86145643, gi\|... - gi\|86145643\|ref\|ZP_01063973.1\| Cytosine/adenosine deaminase [Vibrio sp. MED222], gi\|85836614\|gb\|EAQ5...	156.0	[0..6]	[154..22]
gi\|92088635, gi\|... - gi\|92088635\|ref\|ZP_01273596.1\| CMP/dCMP deaminase, zinc-binding [Lactobacillus reuteri 100-23], gi\|9...	156.0	[0..1]	[155..1]
gi\|116184449 - gi\|116184449\|ref\|ZP_01474386.1\| hypothetical protein VEx2w_02003038 [Vibrio sp. Ex25]	156.0	[0..6]	[154..25]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTKANLTE FEQQLVDKAI GAMENAYCKY SNFKVGAALV CDDGEIIIGA NHENASYGAT  60
   61 ICAERSAIVT ALTKGHRKFK YIVVATELEA PCSPCGVCRQ VLIEFGDYKV ILGSSTSDQI 120
  121 IETTTYELLP YAFTPKSLDD HEKETEERKH HNDHNNKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1zabA
Description:	No description for 1zabA was found.

Predicted functions:

Term	Confidence	Notes
cytidine deaminase activity	4.42667374679603	bayes_pls_golite062009
deaminase activity	2.76997916054448	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	2.27736397496642	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
binding	1.64474382695496	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.51294035758003	bayes_pls_golite062009
IMP cyclohydrolase activity	1.34771936728813	bayes_pls_golite062009
receptor binding	1.25331530291023	bayes_pls_golite062009
hydrolase activity	1.20889076546073	bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity	1.06178740854563	bayes_pls_golite062009
nucleoside binding	0.66793245260795	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	0.36832789692523	bayes_pls_golite062009
cyclohydrolase activity	0.308525511259279	bayes_pls_golite062009
transition metal ion binding	0.25533482618887	bayes_pls_golite062009
protein binding	0.072557222523031	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.0520808212384716	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: