| Protein: | daf-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 546 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for daf-8.
| Description | E-value | Query Range |
Subject Range |
|
|
429.0 | [0..2] | [546..6] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MDDFPSPEPT DPRLEAMAQK VLEETIITEG DGTIYWALKV TRLLSRVAKK HQCFEAFYDA 60
61 VIKGDPKTRC CPAHNEKLIG NFGRAIMCVL RAFRFPVIRY ESQVKSILTC RHAFNSHSRN 120
121 VCLNPYHYRW VEL
|
| Detection Method: |  |
| Confidence: | 43.69897 |
| Match: | 1mhdA |
| Description: | SMAD MH1 domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [134-316] |
1 11 21 31 41 51
| | | | | |
1 PTCQVPPIIV NKELDYGEPP IRTEDALDDW NQKDLKEEQV VASWDVPNVT MRGDEIKLLY 60
61 DRYAAENGDF QYMNYGNFGS FDGSPCSSTT MSLGSSFASL LQQSNRQDDE EPGYYRSGLS 120
121 SPASHAASPR EFIPNGNDTI SLDQEMMDDS EVSDIMHSEN FSSENNGNRK PTYADGRPIT 180
181 PIE
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [317-546] |
1 11 21 31 41 51
| | | | | |
1 PRPLYRSSAL ELGDLSRQAG IYECVEYEES PSWLKLIYYE EGTMIGEKAD VEGHHCLIDG 60
61 FTASRTDSET RSRFSLGWYN NPNRSPQTAE VRGLIGKGVR FYLLAGEVYV ENLCNIPVFV 120
121 QSIGANMKNG FQLNTVSKLP PTGTMKVFDM RLFSKQLRTA AEKTYQDVYC LSRMCTVRVS 180
181 FCKGWGEHYR RSTVLRSPVW FQAHLNNPMH WVDSVLTCMG APPRICSSRT
|
| Detection Method: | |
| Confidence: | 87.221849 |
| Match: | 1khuA |
| Description: | Smad1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.72705938702913 | bayes_pls_golite062009 |
| binding | 2.31656652567204 | bayes_pls_golite062009 |
| transcription regulator activity | 1.93348471274042 | bayes_pls_golite062009 |
| DNA binding | 1.64107635602436 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59899290578262 | bayes_pls_golite062009 |
| transcription activator activity | 1.1056197205863 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.93638089729878 | bayes_pls_golite062009 |
| transforming growth factor beta receptor, cytoplasmic mediator activity | 0.70979718281225 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.59091508757448 | bayes_pls_golite062009 |
| transcription factor activity | 0.554078523633227 | bayes_pls_golite062009 |
| signal transducer activity | 0.29313054064574 | bayes_pls_golite062009 |
| molecular transducer activity | 0.29313054064574 | bayes_pls_golite062009 |
| catalytic activity | 0.257477082550163 | bayes_pls_golite062009 |
| transmembrane receptor protein serine/threonine kinase signaling protein activity | 0.17825540288715 | bayes_pls_golite062009 |
| transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity | 0.0594594490862095 | bayes_pls_golite062009 |
| SMAD binding | 0.0361094043816896 | bayes_pls_golite062009 |
| receptor signaling protein activity | 0.0268350196675502 | bayes_pls_golite062009 |
