| Protein: | xpa-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 241 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for xpa-1.
| Description | E-value | Query Range |
Subject Range |
|
|
275.0 | [0..1] | [241..1] |
|
|
260.0 | [0..18] | [241..56] |
|
|
258.0 | [0..30] | [241..70] |
|
|
257.0 | [0..30] | [241..70] |
|
|
257.0 | [0..27] | [241..58] |
|
|
256.0 | [0..4] | [241..46] |
|
|
255.0 | [0..30] | [241..70] |
|
|
253.0 | [0..19] | [241..57] |
|
Region A: Residues: [1-192] |
1 11 21 31 41 51
| | | | | |
1 MPKRRYNPSA NEEEKIPIVE KLYRENQESD FLGGGFCDDD DEVQERREQI SEMRQKREEA 60
61 AHNLIQAPEN CEKCDKGLMD SWLWERYNCA VCDACRDDKG EHKLLARTEV KNTYLLKDCD 120
121 LDLRKPKLRY WAKKNPHNPR YGDMKLYLKC QIETRVLEVH GSWEDLELKK ELREQSKEVR 180
181 SEKRFEKKLK DL
|
| Detection Method: |  |
| Confidence: | 41.0 |
| Match: | 1xpaA |
| Description: | SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
| DNA binding | 0.69568583152884 | bayes_pls_golite062009 |
| nucleic acid binding | 0.39779340917087 | bayes_pls_golite062009 |
| transcription regulator activity | 0.1367607837242 | bayes_pls_golite062009 |
|
Region A: Residues: [193-241] |
1 11 21 31 41 51
| | | | | |
1 RQQIRGTSGV KVDFGRPHTH EFGKETHVEE DTWRRTCITC EYEEVFEKL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
