| Protein: | trs-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 725 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trs-1.
| Description | E-value | Query Range |
Subject Range |
|
|
567.0 | [0..15] | [722..13] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MRLNCFRIFV HIQKPTQIFK PFYRSLSSEA SDKYHFVNGH KMSKAPTDMA PWPAFIEERI 60
61 KLWDKLKAEY DAEIAAKESE
|
| Detection Method: |  |
| Confidence: | 3.39794 |
| Match: | 1vj7A |
| Description: | Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transferase activity, transferring phosphorus-containing groups | 1.87905122835689 | bayes_pls_golite062009 |
| nucleic acid binding | 1.54766964052089 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.28424599869932 | bayes_pls_golite062009 |
| transferase activity | 1.1355378442847 | bayes_pls_golite062009 |
| binding | 1.05159429628737 | bayes_pls_golite062009 |
| DNA binding | 1.00266449873436 | bayes_pls_golite062009 |
| catalytic activity | 0.75232920999699 | bayes_pls_golite062009 |
| protein binding | 0.117945573723438 | bayes_pls_golite062009 |
|
Region A: Residues: [81-725] |
1 11 21 31 41 51
| | | | | |
1 PIQITLPDGK IHEGKTWRTT PFEIAERISK GLAEAAVIAK VNGAVWDLDR PFEGNAKLEL 60
61 LKFDDDEAKQ VFWHSSAHVL GEAMERYCGG HLCYGPPIQE GFYYDMWHEN RTICPDDFPK 120
121 IDQIVKAAVK DKQKFERLEM TKEDLLEMFK YNEFKVRIIT EKIHTPKTTV YRCGPLIDLC 180
181 RGPHVRHTGK VKAMAITKNS SSYWEGKADA ESLQRLYGIS FPDSKQLKEW QKLQEEAAKR 240
241 DHRKLGKEHD LFFFHQLSPG SAFWYPKGAH IYNKLVDFIR KQYRRRGFTE VITPNMYNKK 300
301 LWETSGHWQH YSEDMFKIEV EKEEFGLKPM NCPGHCLMFG HMPHTYNELP FRFADFGVLH 360
361 RNEMSGALTG LTRVRRFQQD DAHIFCRQDQ ISEEIKQCLD FLEYAYEKVF GFTFKLNLST 420
421 RPEGFLGNIE TWDKAEADLT NALNASGRKW VLNPGDGAFY GPKIDITIQD ALKRNFQCAT 480
481 IQLDFQLPNQ FDLSYFDEKG EKQRPVMIHR AVLGSVERMT AILTESYGGK WPFWLSPRQC 540
541 KIITVHESVR DYANDVKKQI FEAGFEIEYE ENCGDTMNKQ VRKAQLAQFN FILVIGAKEK 600
601 ENGTVNVRTR DNAVRGEVAL DKLISKFRRF ADEYVADTEK SEEWA
|
| Detection Method: | |
| Confidence: | 151.0 |
| Match: | 1qf6A |
| Description: | Threonyl-tRNA synthetase (ThrRS), C-terminal domain; Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain; Threonyl-tRNA synthetase (ThrRS), second 'additional' domain; Threonyl-tRNA synthetase (ThrRS) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.89468709683036 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 7.89468709683036 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.88410036819636 | bayes_pls_golite062009 |
| ligase activity | 6.92073480193262 | bayes_pls_golite062009 |
| threonine-tRNA ligase activity | 6.47381405106149 | bayes_pls_golite062009 |
| phenylalanine-tRNA ligase activity | 2.99105702052936 | bayes_pls_golite062009 |
| serine-tRNA ligase activity | 2.46505535069103 | bayes_pls_golite062009 |
| glycine-tRNA ligase activity | 2.29229136935761 | bayes_pls_golite062009 |
| catalytic activity | 1.99372273395202 | bayes_pls_golite062009 |
| alanine-tRNA ligase activity | 1.82594054955281 | bayes_pls_golite062009 |
| lysine-tRNA ligase activity | 1.72324031407565 | bayes_pls_golite062009 |
| histidine-tRNA ligase activity | 1.72215103383322 | bayes_pls_golite062009 |
| binding | 1.11470390774037 | bayes_pls_golite062009 |
| transcription regulator activity | 1.0753492604686 | bayes_pls_golite062009 |
| asparagine-tRNA ligase activity | 0.921492123574877 | bayes_pls_golite062009 |
| nucleic acid binding | 0.897558352141977 | bayes_pls_golite062009 |
| DNA binding | 0.854148126675211 | bayes_pls_golite062009 |
| transcription repressor activity | 0.55217603492525 | bayes_pls_golite062009 |
| transcription factor activity | 0.283508546234551 | bayes_pls_golite062009 |
| aspartate-tRNA ligase activity | 0.00572514744734753 | bayes_pls_golite062009 |
