| Protein: | CE05267 |
| Organism: | Caenorhabditis elegans |
| Length: | 611 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
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Region A: Residues: [1-234] |
1 11 21 31 41 51
| | | | | |
1 MSFVYEFSRF QFIPTQFFLS ISQYLFNRID KLITIHHLES LISLFSDSLP AKRPADDTDL 60
61 NPFMDDNEAV NEKYPIPESA VGIVIGRGGS EIQGIQAKAG CRVQMSPDAD PSSGVRMVTL 120
121 EGSRSNVETA KHLINEVVAR SQNPRPQYGF PRAQTTIDIA IPPNRCGLII GKSGDTIRQL 180
181 QEKSGCKMIL VQDNQSVSDQ SKPLRITGDP QKIELAKQLV AEILNSGGDG NGGS
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| Detection Method: |  |
| Confidence: | 38.09691 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [235-415] |
1 11 21 31 41 51
| | | | | |
1 GLQMHHAGGG GGASARGEVV VPRSSVGIII GKQGDTIKRL AMETGTKIQF KPDDDPSTPE 60
61 RCAVIMGTRD QIYRATERIT ELVKKSTMQQ GGGGNVAGAM VSNEASTFYM SVPAAKCGLV 120
121 IGKGGETIKQ INSESGAHCE LSRDPTGNAD EKVFVIKGGK RAIEHAKHLI RIKVGDIAPN 180
181 T
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| Detection Method: | |
| Confidence: | 19.69897 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
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| Term | Confidence | Notes |
| binding | 0.766407798661875 | bayes_pls_golite062009 |
| nucleic acid binding | 0.1608635436815 | bayes_pls_golite062009 |
| RNA binding | 0.0205643208063799 | bayes_pls_golite062009 |
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Region A: Residues: [416-488] |
1 11 21 31 41 51
| | | | | |
1 PFRDDSAMTM QTQFSAPAQN NFGGQQQWNP VAQIPAAAQN PYQVGGWQQN SVYAQQTAAP 60
61 AAAPYAAAGI VQP
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| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [489-611] |
1 11 21 31 41 51
| | | | | |
1 QQQVAYQQPQ VVQQVQPATT VAATTTPTVD PVTGEQDYSA QWMEYYKSIG AHDKAEAVEA 60
61 QMKKKKAEAA ARAVVPGGLI QQMPMGMAMP QMSAQARVPT QNYPAYSAAG AAPYQAQQYG 120
121 QYQ
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| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
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