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Protein Overview: CE05267

General Information:
Name(s) found: CE05267 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00007534 status:Confirmed UniProt:Q17936 protein_id:CAA98233.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 611 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA interference [IMP]
    Molecular Function: RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVYEFSRF QFIPTQFFLS ISQYLFNRID KLITIHHLES LISLFSDSLP AKRPADDTDL  60
   61 NPFMDDNEAV NEKYPIPESA VGIVIGRGGS EIQGIQAKAG CRVQMSPDAD PSSGVRMVTL 120
  121 EGSRSNVETA KHLINEVVAR SQNPRPQYGF PRAQTTIDIA IPPNRCGLII GKSGDTIRQL 180
  181 QEKSGCKMIL VQDNQSVSDQ SKPLRITGDP QKIELAKQLV AEILNSGGDG NGGSGLQMHH 240
  241 AGGGGGASAR GEVVVPRSSV GIIIGKQGDT IKRLAMETGT KIQFKPDDDP STPERCAVIM 300
  301 GTRDQIYRAT ERITELVKKS TMQQGGGGNV AGAMVSNEAS TFYMSVPAAK CGLVIGKGGE 360
  361 TIKQINSESG AHCELSRDPT GNADEKVFVI KGGKRAIEHA KHLIRIKVGD IAPNTPFRDD 420
  421 SAMTMQTQFS APAQNNFGGQ QQWNPVAQIP AAAQNPYQVG GWQQNSVYAQ QTAAPAAAPY 480
  481 AAAGIVQPQQ QVAYQQPQVV QQVQPATTVA ATTTPTVDPV TGEQDYSAQW MEYYKSIGAH 540
  541 DKAEAVEAQM KKKKAEAAAR AVVPGGLIQQ MPMGMAMPQM SAQARVPTQN YPAYSAAGAA 600
  601 PYQAQQYGQY Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] PSI-BLAST 38.09691 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    2 View Details [235..415] PSI-BLAST 19.69897 Far upstream binding element, FBP, KH3 and KH4 domains
    3 View Details [416..488] deduced N/A No confident structure predictions are available.
    4 View Details [489..611] PSI-BLAST 4.09691 Sec24

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle