| Protein: | gap-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 629 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gap-1.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..2] | [618..521] |
|
Region A: Residues: [1-149] |
1 11 21 31 41 51
| | | | | |
1 MVLSCRVVDC GGLKLKENQT LLLLVSTIHN SSEVGKLSID AEEKRSKEWL EMPCAEGMLS 60
61 LKLTLWQDLL KGINSVFHGQ VRVDVDENWK SGPAKWFYLR SKANEDGEGG EDGGDIGDAT 120
121 VKVTYQIDHI LRMQVYKPLL DLLFLAGDV
|
| Detection Method: |  |
| Confidence: | 21.522879 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [150-457] |
1 11 21 31 41 51
| | | | | |
1 QPLTASLVAV IEALPKVELG PVSRSLVELM AQSDRIRPVL SSLYVNSILK CQDENTLFRG 60
61 QSLSGKMLFE ILTTYGKMYL ITTLKPVVDK IYKERKNCEV DPARVAVGAS LEKNRNNLLV 120
121 YFQMLFERVT TSSTNCPHLI KQLLYDLRNV VGTHSSRSGV QRLAVSSFVI MRFFAAAILN 180
181 PKAFEIRKDQ PDLRVSRTLL LLSKLLQRLS NCSVSEGPLS SKEIWLNGVF ETVTSEQHKS 240
241 VMASFLDNIS LVGDRSEPQK CTVFKFGNLQ QVDRSRLAWK KVLHYKKRYV QLTNTHLIWQ 300
301 KDVQCAPK
|
| Detection Method: | |
| Confidence: | 35.221849 |
| Match: | 1nf1A |
| Description: | GAP related domain of neurofibromin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| GTPase regulator activity | 5.23789256375467 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 5.21562004568462 | bayes_pls_golite062009 |
| small GTPase regulator activity | 4.91645234075732 | bayes_pls_golite062009 |
| GTPase activator activity | 4.81440293338491 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 4.76400460221691 | bayes_pls_golite062009 |
| Rho GTPase activator activity | 4.58620967349979 | bayes_pls_golite062009 |
| enzyme regulator activity | 4.5322075775333 | bayes_pls_golite062009 |
| Rac GTPase activator activity | 4.48279904625182 | bayes_pls_golite062009 |
| enzyme activator activity | 4.29367232260052 | bayes_pls_golite062009 |
| binding | 1.62780792681766 | bayes_pls_golite062009 |
| protein binding | 1.21496582666968 | bayes_pls_golite062009 |
| GTPase binding | 0.42172811061186 | bayes_pls_golite062009 |
| small GTPase binding | 0.238166011641691 | bayes_pls_golite062009 |
|
Region A: Residues: [458-522] |
1 11 21 31 41 51
| | | | | |
1 GTVPLSDIKF VNVDNKNIIT IVCETMQLQF EAPGGVEATD WLNAIERQRN RAAHEIAETP 60
61 GEHFF
|
| Detection Method: | |
| Confidence: | 14.522879 |
| Match: | 1eazA |
| Description: | Tapp1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.65091781683225 | bayes_pls_golite062009 |
| protein binding | 2.12168271674167 | bayes_pls_golite062009 |
| GTPase regulator activity | 1.66986263418539 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.64990514605397 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.2550809703725 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.25381967078645 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 0.745321902095093 | bayes_pls_golite062009 |
| small GTPase binding | 0.721546282992641 | bayes_pls_golite062009 |
| GTPase binding | 0.70180064264191 | bayes_pls_golite062009 |
|
Region A: Residues: [523-629] |
1 11 21 31 41 51
| | | | | |
1 VDAERHVDKI HTLLYKYRET MIEWRDQLQS NVELDEKTAP ELLKASYVVE EERQSHKDSL 60
61 IATLCSTIDV TDAIQLAHTE YEKENKVSRR IDAIITAKKR QKSFSVK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
