YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE04828
Organism: Caenorhabditis elegans
Length: 502 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04828.

Description E-value Query
Range
Subject
Range
GLPK2_THEMA, GLK... - Glycerol kinase 2 OS=Thermotoga maritima GN=glpK2 PE=3 SV=2, (Q9X1E4) Glycerol kinase 2 (EC 2.7.1.30...
GLPK2_THEMA - Glycerol kinase 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=glpK2 ...
601.0 [0..1] [502..1]

Back

Predicted Domain #1
Region A:
Residues: [1-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLAAIDQG TSSSRFLVFE ADTGELVTSH QIEVRQLFPH GGWVEMDPME LYDTVVSCIS  60
   61 KTIEKLENLG ISADEIKSVG VANQRETSIV WDKETGKPLY NAIVWLDTRT SSLADEAISR 120
  121 TASKSKDEFR AKTGLPIHPY FSALKLKWLF QNVPEVKKAY ADGNLMFGTV DTWLIWKLTG 180
  181 AYVTDVSNAS RTLLLDLHKR KWSTQLCEFF DLPIEILPEI RSSAEVYGHF DKGPLEGVPL 240
  241 SGCLGDQQAA MVGHQCLNAG QTKNTYGTGT FMLCNIGTRP IISKNGLLTT VGFQFGADSP 300
  301 VVYALEGSGS IGGNVVRFLR DNFKFISDAK EMEGLCRSVE DTSGAYFVPS FTGLYTPYWD 360
  361 STARGTILGL TQVTQREHIC LAALRAVAFQ SAEMIAAVEQ DLEGGTKVTT LKVDGGMIAN 420
  421 KLFNEIQADI MGRDIVTPKI TEISGWGAAV AGGIGAQQIS LDEFLQQSSE DNRYTPQKDD 480
  481 NWRSAELARW KEAVKRSCGW AQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 159.0
Match: 1bo5O
Description: Glycerol kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycerol kinase activity 5.25911418019759 bayes_pls_golite062009
carbohydrate kinase activity 2.33338276303563 bayes_pls_golite062009
hexokinase activity 1.70516840340504 bayes_pls_golite062009
glucose binding 1.58717365638543 bayes_pls_golite062009
binding 1.44744777288539 bayes_pls_golite062009
protein binding 0.704303457266874 bayes_pls_golite062009
glucokinase activity 0.47468456642723 bayes_pls_golite062009
sugar binding 0.44352406324938 bayes_pls_golite062009
nucleic acid binding 0.413093555819235 bayes_pls_golite062009
kinase activity 0.345540463799773 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.324655711623803 bayes_pls_golite062009
catalytic activity 0.296484721581333 bayes_pls_golite062009
transcription regulator activity 0.285445761922116 bayes_pls_golite062009
DNA binding 0.279711618446837 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.214617425075414 bayes_pls_golite062009
monosaccharide binding 0.20435276425198 bayes_pls_golite062009
hydrolase activity 0.13181840194556 bayes_pls_golite062009
transferase activity 0.105619024604158 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle