| Protein: | coh-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 652 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coh-1.
| Description | E-value | Query Range |
Subject Range |
|
|
450.0 | [0..56] | [649..1] |
|
Region A: Residues: [1-207] |
1 11 21 31 41 51
| | | | | |
1 MCHPIEFCIC TISDASAHTS SSRTSFCTPS TSHIVSPSFP ICIAAKCSRC GCVAAMFYAD 60
61 FVLSKKGPLS KVWLAAHWEK KLSKAQIFET DVDEAVNEIM QPSQKLALRT TGHLLLGICR 120
121 VYSRKTKYLL ADCNEAFLKI KLVFRSGALD QPNPVLPTFS IQDIYGDFGD NVLPEFDEEE 180
181 LNHAPICQSR LDDITLKEDI PQKFTYN
|
| Detection Method: |  |
| Confidence: | 60.568636 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [208-432] |
1 11 21 31 41 51
| | | | | |
1 YGEPLEDDDF GEIAAGVGPE DYYRLMEDVN KMDLEMELAR DAATTSDNLF GREREPTPFL 60
61 NDAHAPGNAI FGDEDFAGGD MDDDDHNVQG SSGFTDNNAM HMEDMDYESG NTMMRGETPL 120
121 RSDTPNTFRA PSPAPSIAPS VATSVSAMEH DTIESYYERQ AQKRAMQKEQ NMRKRRVDDV 180
181 KMITGEEMKG NMADFSDILT RLDLAPPSRK LMMGKKRSHA EYMHH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [433-559] |
1 11 21 31 41 51
| | | | | |
1 NPGMIGFSKN KQFIRKYQSY LVVTKHDDVD EKNEWIKNAL GLREIGEEEL QQQQQEMDMH 60
61 VQDDSSYVDD FDEVPPLDFD QLDMMDMPQS MDDINMVDDD VPQRNPLSPF APMVEDEEMS 120
121 PSEKRKK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [560-652] |
1 11 21 31 41 51
| | | | | |
1 RDEEKEEPET DEDNRWSKRT HALLQNIATK LENQNGQVEL DEMLKKGTSR KVAAAKFYSL 60
61 LCLKKNQCID IEQKEPYGDI MIKAGPNINI NTI
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.04123976602801 | bayes_pls_golite062009 |
| DNA binding | 1.24351754120608 | bayes_pls_golite062009 |
| transcription regulator activity | 0.973857124068741 | bayes_pls_golite062009 |
| nucleic acid binding | 0.802843603200847 | bayes_pls_golite062009 |
| transcription factor activity | 0.76402352618699 | bayes_pls_golite062009 |
| protein binding | 0.058151715836892 | bayes_pls_golite062009 |
