| Protein: | lin-39 |
| Organism: | Caenorhabditis elegans |
| Length: | 253 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-39.
| Description | E-value | Query Range |
Subject Range |
|
|
138.0 | [0..23] | [234..1] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MTTSTSPSST DAPRATAPES SSSSSSSSSS SSSTSSVGAS GIPSSSELSS TIGYDPMTAS 60
61 AALSAHFGSY YDPTSSSQIA SYFASSQGLG GPQYPILGDQ SLCYNPSVTS THHDWKHLEG 120
121 DDDDDKDDDK KGISGDDDDM DKNSGGA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [148-253] |
1 11 21 31 41 51
| | | | | |
1 VYPWMTRVHS TTGGSRGEKR QRTAYTRNQV LELEKEFHTH KYLTRKRRIE VAHSLMLTER 60
61 QVKIWFQNRR MKHKKENKDK PMTPPMMPFG ANLPFGPFRF PLFNQF
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 1homA |
| Description: | DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.6809639302471 | bayes_pls_golite062009 |
| DNA binding | 2.45264254102339 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32767577674158 | bayes_pls_golite062009 |
| binding | 2.12643314274039 | bayes_pls_golite062009 |
| transcription factor activity | 1.9610710007594 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.71974400731667 | bayes_pls_golite062009 |
| protein binding | 0.57484570028668 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.328460252819506 | bayes_pls_golite062009 |
| transcription repressor activity | 0.245215140763955 | bayes_pls_golite062009 |
| transcription activator activity | 0.0177888191364471 | bayes_pls_golite062009 |
