YRC Public Data Repository - Protein Structure Prediction

Protein:	rsp-2
Organism:	Caenorhabditis elegans
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsp-2.

Description	E-value	Query Range	Subject Range
gi\|13560783 - gi\|13560783\|gb\|AAK30205.1\|AF349964_1 poly(A)-binding protein [Daucus carota]	168.0	[0..3]	[275..220]
PABP2_ARATH - Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1	166.0	[0..3]	[275..216]
pabp - mRNA export shuttling protein PABP_SCHPO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe (strain 972 / AT...	165.0	[0..3]	[280..262]
gi\|73976783 - gi\|73976783\|ref\|XP_857420.1\| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ...	161.0	[0..3]	[277..192]
gi\|173421 - gi\|173421\|gb\|AAA35320.1\| poly(A)-binding protein	161.0	[0..3]	[280..248]
gi\|76689281 - gi\|76689281\|ref\|XP_881384.1\| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ...	161.0	[0..3]	[277..192]
gi\|7673355 - gi\|7673355\|gb\|AAF66823.1\|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]	161.0	[0..3]	[275..207]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVYIGRLP NRASDRDVEH FFRGYGKLSD VIMKNGFGFV DFQDQRDADD AVHDLNGKEL  60
   61 CGERVILEFP RRKVGYNEER SGSGFRGREP TFRKGGERQF SNRYSRPCST RFRLVIDNLS 120
  121 TRYSWQDIKD HIRKLGIEPT YSEAHKRNVN QAIVCFTSHD DLRDAMNKLQ GEDLNGRKLK 180
  181 CTDETRDRSR S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1po6A
Description:	Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [192-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSPRRRSRSR SPTRSRSPPA RRRSPGSDRS DRKSRSASPK KRSDKRARSE SKSRSRSGGR  60
   61 RSRSNSPPNR SPSPKKRRDN SSPRSGSASP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits