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View Structure Prediction Details

Protein: dpf-4
Organism: Caenorhabditis elegans
Length: 629 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dpf-4.

Description E-value Query
Range
Subject
Range
gi|187032138, gi... - gi|39584958|emb|CAE64382.1| Hypothetical protein CBG09069 [Caenorhabditis briggsae], gi|187032138|em...
gi|157773363 - gi|157773363|ref|XP_001664746.1| hypothetical protein CBG09069 [Caenorhabditis briggsae AF16]
320.0 [0..1] [628..1]

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Predicted Domain #1
Region A:
Residues: [1-629]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEAVYGSW DSPITPDLFG KCNCKSICEM QVVGGNVYWI EQNSVTGKRE LYSKPTNGDT  60
   61 RTRWADGQSV QTAIHEYGGG ALHVLADGSV LFATIEGVFY QKSADSGVEQ LAEGNNRMFR 120
  121 FSDFSATDTH VFCVNETHQA DAKFPENRLI SIDRATKNQN VIAHGADFYA YPRVSPDGKK 180
  181 LVWMQWSLPN MPWDETSIRM ADLKGGESSN EVTLKDGTGK QINYSEPTWD GDELLTVNDS 240
  241 TNWWNVYKSA AEPNSVEKNL NPIQREISYP LWQLGFRNYV LNKKYLVMNA DGILYVRSGD 300
  301 VTVEIPTPGY TVFGYLSLDQ NGSDLFAIAS GPKRASSVIS IDLANKNFPL KVHRESRDSS 360
  361 EIDALEISEP EEFVFKSDGV DVSAGTLPPV LLLGHGGPTA PAQNNLDLKK QFFTSRGIAV 420
  421 FDVNYRGSTG FGTEFRRMLY KNCGVADRDD MLNGAKALVE QGKVDAEKVL ITGSSSGGYL 480
  481 ILSCLISPKN IIKAAVSVYG VADLLALDED THKLERCYNE MLIGKYPEQA SIYEERSPIY 540
  541 HIDKIRTPIA FLHGREDTVV PMSQSITMYE KIRASGVTTA LMLFDGEGHG FRNGQVIKES 600
  601 TEATFYFLMK AVGIEPSISS KIEIVNPKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.69897
Match: 1h2xA
Description: Prolyl oligopeptidase, N-terminal domain; Prolyl oligopeptidase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.54323107406855 bayes_pls_golite062009
catalytic activity 1.76673721118052 bayes_pls_golite062009
peptidase activity 1.12259137179218 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.808794364499195 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.112278861211575 bayes_pls_golite062009
serine hydrolase activity 0.08085624250764 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle