YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00504
Organism:	Caenorhabditis elegans
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00504.

Description	E-value	Query Range	Subject Range
CE23950 - Hypothetical protein A (T. aquaticus) status:Confirmed UniProt:P34558 protein_id:CAA81598.2	209.0	[0..17]	[246..8]
gi\|157774403 - gi\|157774403\|ref\|XP_001665267.1\| hypothetical protein CBG10005 [Caenorhabditis briggsae AF16] gi\|39590766, gi\|... - gi\|39590766\|emb\|CAE65139.1\| Hypothetical protein CBG10005 [Caenorhabditis briggsae], gi\|187031460\|em...	204.0	[0..17]	[246..10]
COAE_CARHZ - Dephospho-CoA kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) ...	183.0	[0..22]	[214..6]
gi\|115934484, gi... - gi\|72014803\|ref\|XP_782468.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|115...	181.0	[0..20]	[226..1]
gi\|47214587 - gi\|47214587\|emb\|CAG00941.1\| unnamed protein product [Tetraodon nigroviridis]	180.0	[0..20]	[226..1]
COAE_ARATH - Dephospho-CoA kinase OS=Arabidopsis thaliana GN=COAE PE=2 SV=1	180.0	[0..20]	[243..1]
gi\|68443085 - gi\|68443085\|ref\|XP_700294.1\| PREDICTED: similar to CG1939-PA [Danio rerio]	179.0	[0..20]	[246..1]
gi\|89201561, gi\|... - gi\|89201561\|ref\|ZP_01180299.1\| Dephospho-CoA kinase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	176.0	[0..21]	[216..3]
gi\|65321951 - gi\|65321951\|ref\|ZP_00394910.1\| COG0237: Dephospho-CoA kinase [Bacillus anthracis str. A2012] gi\|228917222, gi... - gi\|228917222\|ref\|ZP_04080779.1\| Dephospho-CoA kinase [Bacillus thuringiensis serovar pulsiensis BGSC... gi\|229124150, gi... - gi\|229124150\|ref\|ZP_04253342.1\| Dephospho-CoA kinase [Bacillus cereus 95/8201], gi\|228659452\|gb\|EEL1... gi\|228830018, gi... - gi\|228929631\|ref\|ZP_04092649.1\| Dephospho-CoA kinase [Bacillus thuringiensis serovar pondicheriensis...	176.0	[0..18]	[216..1]

Back

Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRISSEQI HISLQLQIEM LVVGLSGGVA TGKSTVSSVF RAHGVPIIDA DQVARQVVVP  60
   61 GTSTYNRLRK EFGDEYFDDE HGGVLRRDKL GKLIFSNPEK RKALNGITHP AIRWEMFKQF 120
  121 LTLLITGTKY IVFDTPLLFE SGYDKWIGTT IVVWCDFEQE VERMVTRDNI SRADAESRIH 180
  181 AQMDIEEKKK RAKIVIDNNG NIDELREKVK HVIAQLDKSW KPYIFRVAFG IILGVVPYYF 240
  241 FKYIRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1vhlA
Description:	Crystal structure of dephospho-CoA kinase with adenosine-5'-diphosphate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
dephospho-CoA kinase activity	2.08198137437575	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleic acid binding	0.727912309521959	bayes_pls_golite062009
DNA binding	0.263924823205515	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0880086189831292	bayes_pls_golite062009
pyrophosphatase activity	0.0746809525189132	bayes_pls_golite062009
binding	0.0673679334754882	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0557582578674931	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0529869469040288	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: