YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE00457
Organism: Caenorhabditis elegans
Length: 331 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00457.

Description E-value Query
Range
Subject
Range
MAGT1_CHICK - Magnesium transporter protein 1 OS=Gallus gallus GN=MAGT1 PE=2 SV=1
278.0 [0..4] [331..20]

Back

Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAVYESAQ QQTLEDKVQN LVDLTSRQSI VKFNMDKWKT LVRMQPRNYS MIVMFTALSP  60
   61 GVQCPICKPA YDEFMIVANS HRYTSSEGDR RKVFFGIVDY EDAPQIFQQM NLNTAPILYH 120
  121 FGPKLGAKKR PEQMDFQRQG FDADAIGRFV ADQTEVHVRV IRPPNYTAPV VIALFVALLL 180
  181 GMLYMKRNSL DFLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 1a8yA
Description: CRYSTAL STRUCTURE OF CALSEQUESTRIN FROM RABBIT SKELETAL MUSCLE SARCOPLASMIC RETICULUM AT 2.4 A RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein disulfide isomerase activity 2.05206748531532 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds 2.05206748531532 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups 1.83987272812734 bayes_pls_golite062009
intramolecular oxidoreductase activity 1.49865877199515 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009
transcription regulator activity 0.241650300609171 bayes_pls_golite062009
binding 0.235855919597681 bayes_pls_golite062009
protein binding 0.157273259994554 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [195-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRTVWGFVCL AITFIFMSGQ MWNHIRGPPF MITNPNTKEP SFIHGSTQFQ LIAETYIVGL  60
   61 LYALIAIGFI CVNEAADQSN SKDRKNAGKK LNPLSLLNIP TNTLAIAGLV CICVFFSFLL 120
  121 SVFRSKYRGY PYSFLFA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.508638
Match: PF04756.4
Description: No description for PF04756.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle