YRC Public Data Repository - Protein Structure Prediction

Protein:	hop1
Organism:	Schizosaccharomyces pombe
Length:	528 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hop1.

Description	E-value	Query Range	Subject Range
gi\|42551507, gi\|... - gi\|46122955\|ref\|XP_386031.1\| hypothetical protein FG05855.1 [Gibberella zeae PH-1], gi\|42551507\|gb\|E...	154.0	[0..153]	[479..1070]
gi\|38105803, gi\|... - gi\|39940724\|ref\|XP_359899.1\| hypothetical protein MG04878.4 [Magnaporthe grisea 70-15], gb\|EAA52186....	149.0	[0..151]	[486..1151]
gi\|82878778, gi\|... - gi\|94364896\|ref\|XP_979063.1\| PREDICTED: similar to PHD finger protein 3 isoform 2 [Mus musculus], gi...	148.0	[0..179]	[527..527]
gi\|40739590, gi\|... - gi\|67902448\|ref\|XP_681480.1\| hypothetical protein AN8211.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	144.0	[0..148]	[408..1138]
gi\|16944479, gi\|... - gi\|32412502\|ref\|XP_326731.1\| hypothetical protein [Neurospora crassa], gi\|28923151\|gb\|EAA32368.1\| hy... gi\|85103796 - gi\|85103796\|ref\|XP_961604.1\| hypothetical protein NCU01238 [Neurospora crassa OR74A]	143.0	[0..147]	[418..1150]
gi\|114189544, gi... - gi\|115433110\|ref\|XP_001216692.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	142.0	[0..108]	[404..1082]
gi\|70984988, gi\|... - gi\|70984988\|ref\|XP_748000.1\| PHD transcription factor (Rum1) [Aspergillus fumigatus Af293], gi\|66845...	138.0	[0..148]	[404..1165]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSYKEEILQ TKSDFTLKNL IFFAISTLCY KRALFNENCY KKVNFEIEHF KGADFDCQLK  60
   61 PTVVSLQAGV DKEADSFLEM MKTYIFSLVS MKVPFTVYLI ISSQCKSILE DDAVEKEIFS 120
  121 FTINPGSEEK ICCESFVSYQ RSERFVIKLF LS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [153-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNVKTECKDE EKVVQIITKM ERFQLSKGEA TKAGVFLNTV ETKDCMSWLN RGEFKDIVSF  60
   61 YESNNGIAIS HCSHAFVPIS TEKIMINKES SLFDSQEKID SQLEKFLQPL KYDEIGSTQI 120
  121 LDEQSVEKSL SQGKCEKMQN ESRGLREIKN NNPCEEVKKS NWLKKNISGS DKVDKAEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [331-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKALLNCECG DSTEDSEMFQ CERCDGWVHC ACYGFESDSD PRQPNQLLCY TCLLVDSESS  60
   61 LYDRMTMLVA YRRAIRCIWA SEYQGFQKLA ARLNCSYADA KRIEERLVNE NIIYKEKKRK 120
  121 WIYFTNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2f6jA
Description:	No description for 2f6jA was found.

Predicted Domain #4

Region A:
Residues: [458-528]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEMVSYLRE KYFTPSRWIS HLNFQNYRQE NQRVNMRSFL RPERMEVIER PKKVSKTSNT  60
   61 KETDTMKPLR I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.154902
Match:	2e7oA
Description:	No description for 2e7oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits