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Protein Overview: hop1

General Information:
Name(s) found: hop1 / SPBC1718.02 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • linear element associated protein Hop1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 528 amino acids

    Gene Ontology:
    Cellular Component: linear element [IDALink to PubMed article]
    Biological Process: [NOT]linear element assembly [TASLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    zinc ion binding [IEA]
    small conjugating protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSYKEEILQ TKSDFTLKNL IFFAISTLCY KRALFNENCY KKVNFEIEHF KGADFDCQLK  60
   61 PTVVSLQAGV DKEADSFLEM MKTYIFSLVS MKVPFTVYLI ISSQCKSILE DDAVEKEIFS 120
  121 FTINPGSEEK ICCESFVSYQ RSERFVIKLF LSGNVKTECK DEEKVVQIIT KMERFQLSKG 180
  181 EATKAGVFLN TVETKDCMSW LNRGEFKDIV SFYESNNGIA ISHCSHAFVP ISTEKIMINK 240
  241 ESSLFDSQEK IDSQLEKFLQ PLKYDEIGST QILDEQSVEK SLSQGKCEKM QNESRGLREI 300
  301 KNNNPCEEVK KSNWLKKNIS GSDKVDKAEK KKALLNCECG DSTEDSEMFQ CERCDGWVHC 360
  361 ACYGFESDSD PRQPNQLLCY TCLLVDSESS LYDRMTMLVA YRRAIRCIWA SEYQGFQKLA 420
  421 ARLNCSYADA KRIEERLVNE NIIYKEKKRK WIYFTNKSPE MVSYLREKYF TPSRWISHLN 480
  481 FQNYRQENQR VNMRSFLRPE RMEVIERPKK VSKTSNTKET DTMKPLRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] deduced N/A No confident structure predictions are available.
    2 View Details [153..330] MSA 2.454995 View MSA. No confident structure predictions are available.
    3 View Details [331..457] PSI-BLAST 15.154902 No description for 2f6jA was found.
    4 View Details [458..528] PSI-BLAST 7.154902 No description for 2e7oA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle