YRC Public Data Repository - Protein Structure Prediction

Protein:	hop1
Organism:	Schizosaccharomyces pombe
Length:	528 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hop1.

Description	E-value	Query Range	Subject Range
gi\|42551507, gi\|... - gi\|46122955\|ref\|XP_386031.1\| hypothetical protein FG05855.1 [Gibberella zeae PH-1], gi\|42551507\|gb\|E...	154.0	[0..153]	[479..1070]
gi\|38105803, gi\|... - gi\|39940724\|ref\|XP_359899.1\| hypothetical protein MG04878.4 [Magnaporthe grisea 70-15], gb\|EAA52186....	149.0	[0..151]	[486..1151]
gi\|82878778, gi\|... - gi\|94364896\|ref\|XP_979063.1\| PREDICTED: similar to PHD finger protein 3 isoform 2 [Mus musculus], gi...	148.0	[0..179]	[527..527]
gi\|40739590, gi\|... - gi\|67902448\|ref\|XP_681480.1\| hypothetical protein AN8211.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	144.0	[0..148]	[408..1138]
gi\|16944479, gi\|... - gi\|32412502\|ref\|XP_326731.1\| hypothetical protein [Neurospora crassa], gi\|28923151\|gb\|EAA32368.1\| hy... gi\|85103796 - gi\|85103796\|ref\|XP_961604.1\| hypothetical protein NCU01238 [Neurospora crassa OR74A]	143.0	[0..147]	[418..1150]
gi\|114189544, gi... - gi\|115433110\|ref\|XP_001216692.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	142.0	[0..108]	[404..1082]
gi\|70984988, gi\|... - gi\|70984988\|ref\|XP_748000.1\| PHD transcription factor (Rum1) [Aspergillus fumigatus Af293], gi\|66845...	138.0	[0..148]	[404..1165]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSYKEEILQ TKSDFTLKNL IFFAISTLCY KRALFNENCY KKVNFEIEHF KGADFDCQLK  60
   61 PTVVSLQAGV DKEADSFLEM MKTYIFSLVS MKVPFTVYLI ISSQCKSILE DDAVEKEIFS 120
  121 FTINPGSEEK ICCESFVSYQ RSERFVIKLF LS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [153-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNVKTECKDE EKVVQIITKM ERFQLSKGEA TKAGVFLNTV ETKDCMSWLN RGEFKDIVSF  60
   61 YESNNGIAIS HCSHAFVPIS TEKIMINKES SLFDSQEKID SQLEKFLQPL KYDEIGSTQI 120
  121 LDEQSVEKSL SQGKCEKMQN ESRGLREIKN NNPCEEVKKS NWLKKNISGS DKVDKAEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [331-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKALLNCECG DSTEDSEMFQ CERCDGWVHC ACYGFESDSD PRQPNQLLCY TCLLVDSESS  60
   61 LYDRMTMLVA YRRAIRCIWA SEYQGFQKLA ARLNCSYADA KRIEERLVNE NIIYKEKKRK 120
  121 WIYFTNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2f6jA
Description:	No description for 2f6jA was found.

Predicted Domain #4

Region A:
Residues: [458-528]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEMVSYLRE KYFTPSRWIS HLNFQNYRQE NQRVNMRSFL RPERMEVIER PKKVSKTSNT  60
   61 KETDTMKPLR I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.154902
Match:	2e7oA
Description:	No description for 2e7oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits