YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3E7.13c
Organism:	Schizosaccharomyces pombe
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3E7.13c.

Description	E-value	Query Range	Subject Range
gi\|50759698 - gi\|50759698\|ref\|XP_417740.1\| PREDICTED: similar to GCIP-interacting protein p29 isoform 1 [Gallus ga...	333.0	[0..4]	[229..355]
gi\|76611404 - gi\|76611404\|ref\|XP_600652.2\| PREDICTED: similar to Pre-mRNA-splicing factor SYF2 (CCNDBP1-interactor...	275.0	[0..2]	[229..57]
gi\|73950598 - gi\|73950598\|ref\|XP_535357.2\| PREDICTED: similar to CCNDBP1 interactor isoform 1 [Canis familiaris]	263.0	[0..6]	[229..100]
SYF2_ASPFU - Pre-mRNA-splicing factor syf2 - Aspergillus fumigatus (Sartorya fumigata) gi\|66849480, gi\|... - gi\|70993998\|ref\|XP_751846.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668494...	258.0	[0..2]	[214..53]
SYF2_MOUSE - Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1 SYF2_RAT - Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1	251.0	[0..2]	[229..23]
gi\|39940120, gi\|... - gi\|39940120\|ref\|XP_359597.1\| hypothetical protein MG05180.4 [Magnaporthe grisea 70-15], gb\|EAA52488.... SYF2_MAGGR - Pre-mRNA-splicing factor SYF2 - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)	251.0	[0..2]	[229..91]
gi\|19173786, gi\|... - gi\|19173786\|ref\|NP_596908.1\| SYF2 homolog, RNA splicing factor [Rattus norvegicus], gi\|14039808\|gb\|A...	250.0	[0..2]	[229..23]
gi\|61371056 - gi\|61371056\|gb\|AAX43601.1\| GCIP-interacting protein p29 [synthetic construct]	247.0	[0..6]	[229..28]
SYF2_GECJA - Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1	247.0	[0..2]	[229..30]
gi\|123979520, gi... - gi\|60654663\|gb\|AAX31896.1\| GCIP-interacting protein p29 [synthetic construct], gi\|157927960\|gb\|ABW03... SYF2 - SYF2 homolog, RNA splicing factor (S. cerevisiae)	246.0	[0..6]	[229..28]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPSHSREA RVEKLKKIRE QMRKSSHENR KEVVQEHSRM RIDPALERRL ERKRMEAEEE  60
   61 LAKIETEEEG GDFERRRAWD WTIEESEKWD QRLRKKKQTI QNVAFSDYHS QASKDYNRGI 120
  121 RDLKPDYEKY DKDKKEEKSK SRSVALYDEA ERLDWVSNKP DKEHVERLVE SIKKQDQRRL 180
  181 KNTKRRGTDE EDHITFINER NRKFNLKLQR FYSKYTKDIK EDLERGTAL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits