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Protein Overview: SYF2_RAT

General Information:
Name(s) found: SYF2_RAT [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 242 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    spliceosomal complex [IEA]
    Biological Process: RNA splicing [IEA]
    mRNA processing [IEA]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVTEVVVP ADGAEARPLA AEELAAQKRE QRLRKFRELH LKRNEARKLN HQEVVEEDKR  60
   61 LKLPANWEAK KARLEWELQE EEKKKECAAR GEDYEKVKLL EISAEDAERW ERRKKKKNPD 120
  121 LGFSDYAAAQ LRQYHRLTKQ IKPDMESYER QREKHGEDFF PTSNSLLHGT HVPSSEEIDR 180
  181 MVLDLEKQIE KRDKYSRRRP YNDDADIDYI NERNAKFNKK AERFYGKYTA EIKQNLERGT 240
  241 AV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..242] FFAS03 1.07 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle