YRC Public Data Repository - Protein Structure Prediction

Protein:	rtt109
Organism:	Schizosaccharomyces pombe
Length:	369 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rtt109.

Description	E-value	Query Range	Subject Range
gi\|40741410, gi\|... - gi\|67903640\|ref\|XP_682076.1\| hypothetical protein AN8807.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	369.0	[0..3]	[261..10]
gi\|83773616 - gi\|83773616\|dbj\|BAE63743.1\| unnamed protein product [Aspergillus oryzae] gi\|169780824 - gi\|169780824\|ref\|XP_001824876.1\| hypothetical protein [Aspergillus oryzae RIB40]	356.0	[0..3]	[318..31]
gi\|66851321, gi\|... - gi\|70997906\|ref\|XP_753685.1\| DNA damage response protein Rtt109 [Aspergillus fumigatus Af293], gi\|66...	349.0	[0..3]	[261..10]
gi\|42554508, gi\|... - gi\|46130876\|ref\|XP_389169.1\| hypothetical protein FG08993.1 [Gibberella zeae PH-1], gi\|42554508\|gb\|E...	347.0	[0..5]	[261..418]
gi\|115400173, gi... - gi\|115400173\|ref\|XP_001215675.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	342.0	[0..6]	[261..307]
RTT109 - Histone acetyltransferase critical for cell survival in the presence of DNA damage during S phase; a... gi\|190406040 - gi\|190406040\|gb\|EDV09307.1\| hypothetical protein SCRG_04987 [Saccharomyces cerevisiae RM11-1a] gi\|151941167 - gi\|151941167\|gb\|EDN59545.1\| regulator of Ty1 transposition [Saccharomyces cerevisiae YJM789] RT109_YEAST - Histone acetyltransferase RTT109 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT109 ...	329.0	[0..3]	[368..5]
gi\|38106550, gi\|... - gi\|39976209\|ref\|XP_369495.1\| hypothetical protein MG05969.4 [Magnaporthe grisea 70-15], gb\|EAA52841....	323.0	[0..5]	[289..26]
gi\|85090662 - gi\|85090662\|ref\|XP_958524.1\| hypothetical protein NCU09825 [Neurospora crassa OR74A] gi\|28919894, gi\|... - gi\|32420063\|ref\|XP_330475.1\| hypothetical protein [Neurospora crassa], gi\|28919894\|gb\|EAA29288.1\| co...	322.0	[0..5]	[261..45]
gi\|119183325, gi... - gi\|90301500\|gb\|EAS31131.1\| hypothetical protein CIMG_06610 [Coccidioides immitis RS], gi\|119183325\|r...	269.0	[0..5]	[261..10]
gi\|111056048 - gi\|111056048\|gb\|EAT77168.1\| hypothetical protein SNOG_15503 [Phaeosphaeria nodorum SN15]	260.0	[0..4]	[261..13]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLWSESIL EGRKLSIYHL KSTLEKCPFL FGQSKKSKDF QFGSHLFLVE EQNVFIFGME  60
   61 CIVYEKNKEF IVFVSKADST GFGSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSCNSLAFC CLVTLIDGLR KQGAENVTLT LFAIAQGQYL FPESVDNGQK HVLNDSGLLR  60
   61 WWVNCLEKLR KYYTDSEAPN DSEKQKNSTL LPKAYLFVPG LENIRSYLPN RHWIESNAIT 120
  121 TGKAVEELPR FPDDPKCRYL CELQDEKSDM SVEEFWDTLT YRQECSSGKL VGFFTLQLQF 180
  181 YQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [268-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TREFIAKDNF GDSGVMIPAK LYRVTYDTLL KHPFGSLSDA QSSTEKFLSN TLSAVQNLKD  60
   61 FHYKRYKLDI CGLAKRDDRK NHNHSKPATQ ANILQPRKKV KK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.821	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits