YRC Public Data Repository - Protein Structure Prediction

Protein:	taf3
Organism:	Schizosaccharomyces pombe
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf3.

Description	E-value	Query Range	Subject Range
gi\|38109802, gi\|... - gi\|39950972\|ref\|XP_363339.1\| hypothetical protein MGG_01265 [Magnaporthe grisea 70-15], gb\|EAA55614....	172.0	[0..4]	[152..2]
gi\|32420177, gi\|... - gi\|32420177\|ref\|XP_330532.1\| predicted protein [Neurospora crassa], gi\|28925609\|gb\|EAA34630.1\| conse... gi\|85111289 - gi\|85111289\|ref\|XP_963866.1\| hypothetical protein NCU03096 [Neurospora crassa OR74A]	156.0	[0..4]	[153..2]
gi\|42545080, gi\|... - gi\|46108428\|ref\|XP_381272.1\| hypothetical protein FG01096.1 [Gibberella zeae PH-1], gi\|42545080\|gb\|E...	154.0	[0..4]	[153..2]
gi\|119194149, gi... - gi\|90306464\|gb\|EAS36095.1\| hypothetical protein CIMG_01449 [Coccidioides immitis RS], gi\|119194149\|r...	128.0	[0..5]	[145..2]
gi\|84105476 - gi\|84105476\|gb\|AAI11511.1\| Ccna1 protein [Xenopus laevis]	117.0	[0..5]	[143..1]
gi\|159129878 - gi\|159129878\|gb\|EDP54992.1\| Bromodomain associated domain protein [Aspergillus fumigatus A1163] gi\|71002280, gi\|... - gi\|71002280\|ref\|XP_755821.1\| Bromodomain associated domain protein [Aspergillus fumigatus Af293], gi...	116.0	[0..12]	[149..9]
gi\|74315971, gi\|... - gi\|74315971\|ref\|NP_082024.1\| TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto...	116.0	[0..5]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETQIDELY FSLMRIFCSQ TLRAAGIDRT KVSLLNSFTD ITIRYIRLLS ETAMAKAEVG  60
   61 RRSCCDLGDL RLAMEEIGLL NGSEEDVKTL VEWFNGPQVA ELRRVSGFVQ DSETQVKPKD 120
  121 WLTSLIQKQI RVSGPERFYE TVFSASNEEE DVKDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1p3pB
Description:	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	9.25279783093877	bayes_pls_golite062009
DNA binding	4.24625687315724	bayes_pls_golite062009
transcription regulator activity	4.08606081850613	bayes_pls_golite062009
transcription initiation factor activity	3.96621818094279	bayes_pls_golite062009
nucleic acid binding	3.93473976418251	bayes_pls_golite062009
binding	3.79827182235984	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.28941584139552	bayes_pls_golite062009
transcription factor activity	2.31114764804139	bayes_pls_golite062009
protein binding	1.2861218811362	bayes_pls_golite062009
transcription activator activity	1.25487495162413	bayes_pls_golite062009
transcription factor binding	1.15204005455906	bayes_pls_golite062009
transcription coactivator activity	1.1297723528047	bayes_pls_golite062009
nucleotidyltransferase activity	1.10331930589736	bayes_pls_golite062009
transcription cofactor activity	1.01502031330902	bayes_pls_golite062009
transcription repressor activity	0.72554769377984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: