YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC970.02
Organism:	Schizosaccharomyces pombe
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC970.02.

Description	E-value	Query Range	Subject Range
gi\|44981206 - gi\|44981206\|gb\|AAS51028.1\| ACL200Wp [Ashbya gossypii ATCC 10895] gi\|45185488, gi\|... - gi\|45185488\|ref\|NP_983204.1\| ACL200Wp [Ashbya gossypii ATCC 10895], gi\|44981206\|gb\|AAS51028.1\| ACL20...	497.0	[0..2]	[441..13]
gi\|85114207 - gi\|85114207\|ref\|XP_964654.1\| hypothetical protein ( (AL442164) conserved hypothetical protein [Neuro... gi\|16945405, gi\|... - gi\|32417488\|ref\|XP_329222.1\| hypothetical protein ( (AL442164) conserved hypothetical protein [Neuro...	489.0	[0..4]	[437..13]
gi\|151945943 - gi\|151945943\|gb\|EDN64175.1\| mannosidase [Saccharomyces cerevisiae YJM789] gi\|207342125 - gi\|207342125\|gb\|EDZ69984.1\| YMR238Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408464 - gi\|190408464\|gb\|EDV11729.1\| mannan endo-1,6-alpha-mannosidase DFG5 precursor [Saccharomyces cerevisi... DFG5_YEAST - Mannan endo-1,6-alpha-mannosidase DFG5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=D... DFG5 - Putative mannosidase, essential glycosylphosphatidylinositol (GPI)-anchored membrane protein require...	477.0	[0..1]	[441..5]
gi\|46125277, gi\|... - gi\|46125277\|ref\|XP_387192.1\| hypothetical protein FG07016.1 [Gibberella zeae PH-1], gi\|42553703\|gb\|E...	470.0	[0..8]	[437..10]
gi\|50308589, gi\|... - gi\|50308589\|ref\|XP_454297.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643432\|emb\|CAG9938... gi\|49643432 - gi\|49643432\|emb\|CAG99384.1\| KLLA0E07723p [Kluyveromyces lactis]	468.0	[0..3]	[441..4]
DCW1_ASHGO - Mannan endo-1,6-alpha-mannosidase DCW1 OS=Ashbya gossypii GN=DCW1 PE=3 SV=1 DCW1_ASHGO - Mannan endo-1,6-alpha-mannosidase DCW1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 992...	467.0	[0..17]	[441..19]

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Predicted Domain #1

Region A:
Residues: [1-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTIFISLA TILFSFAEAI SVDLNDTSSV DLATSLVADG LLNYYAGQHK GGTIGMFLPP  60
   61 AYWWEAGAAW NGLLNRYIAT GNSTYNELVK TSMLYQSGED SDYMPSNYTT SEGNDDQAFW 120
  121 GLTVISAAEA NFSNPAADEP QWLELAQAVF NQQVTRWDTD HCNGGLRWQI TEFNSGYNYK 180
  181 NTVSNGAFFQ LAARLARFTD NDTYAEWANV AYDWSQRIGF IQEDYTVFDG SSIKDNCSSI 240
  241 EITQWTYNIG LYMAGAAYMY NYTNSTVWKT RVEGFANKTA KTFFFKDIMF EPVCEIALSC 300
  301 NYDQTSFKGF LTRFMVYTAQ MAPFTAPLLE PLLISTAKAA AGACCGGYDG VTCGVQWWWN 360
  361 ND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.221849
Match:	1vd5A
Description:	Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
trehalase activity	4.82932126310383	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	4.20661739420075	bayes_pls_golite062009
alpha,alpha-trehalase activity	4.18601176775771	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	3.49882811932206	bayes_pls_golite062009
hydrolase activity	2.58427541503761	bayes_pls_golite062009
glucosidase activity	1.57801734898595	bayes_pls_golite062009
catalytic activity	1.16285856935495	bayes_pls_golite062009
binding	1.06330183651166	bayes_pls_golite062009
glucan 1,4-alpha-glucosidase activity	1.02505760583409	bayes_pls_golite062009
protein binding	0.18984948020481	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.0683547784833305	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [363-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TWDGLYGLGE QMSALEAIQA PLLLKSLQVF KASNGGSSTG DPNAGLYTAP VSFANKNFEN  60
   61 LRKHWMLLGF FLLVPTLVLY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: