| Protein: | sds3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 491 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sds3.
| Description | E-value | Query Range |
Subject Range |
|
|
137.0 | [0..2] | [419..1398] |
|
|
136.0 | [0..1] | [441..690] |
|
|
134.0 | [0..49] | [467..972] |
|
|
129.0 | [0..2] | [398..582] |
|
|
127.0 | [0..114] | [479..1] |
|
|
126.0 | [0..1] | [483..50] |
|
|
126.0 | [0..19] | [310..678] |
|
Region A: Residues: [1-249] |
1 11 21 31 41 51
| | | | | |
1 MTENLQSESI PHEILPKEPF DLPMNNLKSS PKNKDSEKRI NNSIAESEQV VDSALSNPET 60
61 NANEDIIAPQ LPSQNSEIIE KNSPVNKLNS STSLTTHQLA SLPKLEVTDH DNVSEAETVV 120
121 LNEDEEKETS LVGSVSVTED LGDSSAIGRT ILVNNSVEPQ MENTANITIV SPSLKESDFE 180
181 SEEKATNDNN GLIETNHNSK LEESSEHEEE EDEESNIERT EDSDHQIPQR GGTLEAPRKG 240
241 GPRSGVGSR
|
| Detection Method: |  |
| Confidence: | 1.37 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [250-491] |
1 11 21 31 41 51
| | | | | |
1 KRKRATVSRK WSTNSESKIK RVALETSQEE SDREIADRRS ASEQAHEADD EKAIKRKEAF 60
61 DALLNIETEF TFLRNRLYGK KLLKLNEHEE MIQNETHERF NACIDLITER RDDRVRLATE 120
121 NLMKQLGNIK NVMDYVTKQR KYQLLFDKRR IRQALLTKIA TKCFQLLNKQ KSVHDPTYIT 180
181 QKTMSYRQSA LLQKQRIEYE AAVLCELNSF AGFPTAPIIE TASFDDIRND LLEMGCLSEN 240
241 QD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
