YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1906.02c
Organism:	Schizosaccharomyces pombe
Length:	581 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1906.02c.

Description	E-value	Query Range	Subject Range
CUE3_YEAST - CUE domain-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUE3 PE=... CUE3 - Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecu...	395.0	[0..183]	[581..233]
gi\|45198495, gi\|... - gi\|45198495\|ref\|NP_985524.1\| AFL024Wp [Ashbya gossypii ATCC 10895], gi\|44984446\|gb\|AAS53348.1\| AFL02... gi\|44984446 - gi\|44984446\|gb\|AAS53348.1\| AFL024Wp [Ashbya gossypii ATCC 10895]	388.0	[0..182]	[581..231]
gi\|46123377, gi\|... - gi\|46123377\|ref\|XP_386242.1\| hypothetical protein FG06066.1 [Gibberella zeae PH-1], gi\|42551188\|gb\|E...	298.0	[0..225]	[548..282]
gi\|38105335, gi\|... - gi\|39942582\|ref\|XP_360828.1\| hypothetical protein MG03371.4 [Magnaporthe grisea 70-15], gb\|EAA51776....	284.0	[0..264]	[546..251]
gi\|49094538, gi\|... - gi\|67536846\|ref\|XP_662197.1\| hypothetical protein AN4593.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	274.0	[0..253]	[551..317]
gi\|71012956, gi\|... - gi\|71012956\|ref\|XP_758544.1\| hypothetical protein UM02397.1 [Ustilago maydis 521], ref\|XP_400012.1\| ...	247.0	[0..248]	[549..326]
gi\|28920643, gi\|... - gi\|32413399\|ref\|XP_327179.1\| hypothetical protein [Neurospora crassa], gi\|28920643\|gb\|EAA30004.1\| pr... gi\|85092127 - gi\|85092127\|ref\|XP_959240.1\| hypothetical protein NCU06893 [Neurospora crassa OR74A]	246.0	[0..267]	[534..338]
gi\|111059357 - gi\|111059357\|gb\|EAT80477.1\| hypothetical protein SNOG_12065 [Phaeosphaeria nodorum SN15]	234.0	[0..257]	[543..311]
gi\|49644697\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50311075, gi\|... - gi\|50311075\|ref\|XP_455561.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644697\|emb\|CAG9826...	231.0	[0..169]	[581..223]
gi\|50287721, gi\|... - gi\|50287721\|ref\|XP_446290.1\| unnamed protein product [Candida glabrata], gi\|49525597\|emb\|CAG59214.1\|... gi\|49525597 - gi\|49525597\|emb\|CAG59214.1\| unnamed protein product [Candida glabrata]	223.0	[0..161]	[581..210]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENVISSSK NVVSKLLYVK DEYWPSVAPA ATELISKLIN AFWCQTLNGQ LVEEDEGERN  60
   61 CIFLFDRCLK TEGCLKKIGP VTVMQFLACF LLSSQNHAYA WSVCRQIPSD DMAFKFTKCF 120
  121 QNSQQFRDAN FCKLVLVWTV CQCVSSTVYY PAILDLLPVL SDLVKEMEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPASLQAKEN EFWLKKLIQT SLHHSSDNSL VFYLEMLLDS LDLRNCIYVV FEDEALFRRL  60
   61 KDIGNPEIRM MLDSGLRDWR KQRSGRSSSH VASKGI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [266-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKVVNINPGD VKSLIELFPQ LSVEEAVEHL SASLGNIDAA CESVITSSLP EELDSSTHSP  60
   61 IYTKPNVDSM HKQPKKAIAP LSLSSSVTAV ISNRTSDKKT RSTVAEEDDI THLNISPDRL 120
  121 YLNKKPEDLN FWKKSVPETD KSRVLNLLAM AEDDEYDDTY DDLDTTGPVD SGVGDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [442-581]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEASSKDAH DFQKFINQTL YDFYQQNPEV FDQKARKSKE RADLLAKLDN SLTHEQIEGW  60
   61 RRMFTTDSKF AEAVKKEVTF GSGNTNIGSL RQTKFKQSNY TPPELNDGSR QHRPSRPSKN 120
  121 PSLKKKKYVR TKPKKASNEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits