YRC Public Data Repository - Protein Structure Prediction

Protein:	cwf10
Organism:	Schizosaccharomyces pombe
Length:	983 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwf10.

Description	E-value	Query Range	Subject Range
gi\|109122950 - gi\|109122950\|ref\|XP_001118006.1\| PREDICTED: eukaryotic translation elongation factor 2 [Macaca mulat...	781.0	[0..123]	[970..578]
gi\|54644076, gi\|... - gi\|54644076\|gb\|EAL32818.1\| GA15316-PA [Drosophila pseudoobscura], gi\|125983989\|ref\|XP_001355759.1\| G...	761.0	[0..123]	[973..2]
CG4849-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4849 (CG4849, FBgn0039566). It is a protein... gi\|220956726, gi... - gi\|220956726\|gb\|ACL90906.1\| CG4849-PA [synthetic construct], gi\|220947200\|gb\|ACL86143.1\| CG4849-PA [...	761.0	[0..1]	[982..1]
gi\|74140876 - gi\|74140876\|dbj\|BAE22047.1\| unnamed protein product [Mus musculus]	761.0	[0..123]	[970..2]
EF2_CHICK - Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3	759.0	[0..123]	[970..2]
gi\|62657153, gi\|... - gi\|62657153\|ref\|XP_213492.3\| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein compon...	758.0	[0..1]	[982..1]
gi\|108872311, gi... - gi\|157129185\|ref\|XP_001655314.1\| 116 kda U5 small nuclear ribonucleoprotein component [Aedes aegypti...	758.0	[0..1]	[979..1]
gi\|73965505 - gi\|73965505\|ref\|XP_548058.2\| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein compon... gi\|149723695 - gi\|149723695\|ref\|XP_001489017.1\| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein co...	757.0	[0..1]	[982..1]
gi\|114666736, gi... - gi\|114666740\|ref\|XP_001145705.1\| PREDICTED: U5 snRNP-specific protein, 116 kD isoform 6 [Pan troglod... EFTUD2 - elongation factor Tu GTP binding domain containing 2 gi\|168274304 - gi\|168274304\|dbj\|BAG09572.1\| 116 kDa U5 small nuclear ribonucleoprotein component [synthetic constru...	757.0	[0..1]	[982..1]
gi\|40788951 - gi\|40788951\|dbj\|BAA04699.2\| KIAA0031 [Homo sapiens]	757.0	[0..1]	[982..6]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDLYDEFG NYIGPENEED EEELFPQAPS PTIAQVPSFE EVIPDEELED VERAEEMALS  60
   61 HLEPQNAVVL HEDKQYYPSA EEVYGSNVDI MVQEQDTQPL SQPIIEPIRH KRIAIETTNV 120
  121 PDTVYKKEFL FGLLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1mkyA
Description:	Probable GTPase Der, N-terminal and middle domains; Probable GTPase Der, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [136-983]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTDDVRSFIV AGHLHHGKSA LLDLLVYYTH PDTKPPKRRS LRYTDTHYLE RERVMSIKST  60
   61 PLTLAVSDMK GKTFAFQCID TPGHVDFVDE VAAPMAISDG VVLVVDVIEG VMINTTRIIK 120
  121 HAILHDMPIV LVLNKVDRLI LELRLPPNDA YHKLRHVIDE VNDNICQISK DLKYRVSPEL 180
  181 GNVCFASCDL GYCFTLSSFA KLYIDRHGGI DVDLFSKRLW GDIYFDSKTR KFAKQSLDGS 240
  241 GVRSFVHFIL EPLYKLHTLT ISDEAEKLKK HLSSFQIYLK PKDYLLDPKP LLQLICASFF 300
  301 GFPVGFVNAV TRHIPSPREN AARKASQSYI GPINSSIGKA ILEMSREESA PLVMHVTKLY 360
  361 NTVDANNFYA FARVYSGQVK KGQKVKVLGE NYSLEDEEDM VVAHIAEICV PCARYRLHVD 420
  421 GAVAGMLVLL GGVDNSISKT ATIVSDNLKD DPYIFRPIAH MSESVFKVAV EPHNPSELPK 480
  481 LLDGLRKTNK SYPLSITKVE ESGEHTIFGT GEMYMDCLLY DLRTLYSEIE IRVSDPVARF 540
  541 CETAVDTSSI KCFSDTPNKK NRITMVVEPL EKGISNDIEN GKVNINWPQK RISEFFQKNY 600
  601 DWDLLASRSI WAFGPDDRGT NILRDDTLST DVDKNVLNSV KEYIKQGFQW GTREGPLCDE 660
  661 TIRNVNFRLM DVVLAPEQIY RGGGQIIPTA RRVCYSSFLT ASPRLMEPVY MVEVHAPADS 720
  721 LPIIYDLLTR RRGHVLQDIP RPGSPLYLVR ALIPVIDSCG FETDLRVHTQ GQAMCQMVFD 780
  781 HWQVVPGDPL DKSIKPKPLE PARGSDLARD FLIKTRRRKG LVEDVSTTRY FDQEMIDSLK 840
  841 EAGVVLSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1n0uA
Description:	Elongation factor 2 (eEF-2), domain II; Elongation factor 2 (eEF-2), N-terminal (G) domain; Elongation factor 2 (eEF-2), domain IV; Elongation factor 2 (eEF-2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits