| Protein: | vps8 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1272 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps8.
| Description | E-value | Query Range |
Subject Range |
|
|
925.0 | [0..29] | [1185..93] |
|
|
922.0 | [0..29] | [1185..93] |
|
|
910.0 | [0..29] | [1185..93] |
|
|
903.0 | [0..29] | [1185..93] |
|
|
903.0 | [0..29] | [1185..93] |
|
Region A: Residues: [1-541] |
1 11 21 31 41 51
| | | | | |
1 MQSKYGRSSL KIKNGDDTRT LRALSFSKDS VNSSSFDNEA ASTTLGISTA IHASNRPFRQ 60
61 DEYSWNDCWM RWGQLRRVSS QLRELRFTMN DQPATVTSIA YQGTLLVAGT SSGHVLLNDW 120
121 RTNDFQILKP GLSSNESVTL PVTSLAISNS KRIVCQGHAG GIIFVWDVSR KPPLQLFTIN 180
181 QHSEDSVLTH LVFNGNSDDV LLSTDHLGKI AVHEFYNLVI NKHCTSWNLD MSKSNSLNLD 240
241 SIIVDTSSIS FEELHITGVK HFSFVVLQSL QSIQIVTLFP KTTLIYEFKY PAGIVSSACH 300
301 SFSSSIVHKN GENTKLHAFF ATAYNNNLRL YSVTFHKGYM SLQLMDRKKF AKAIWKLWWF 360
361 PSSSIIIILF DDMELAFVNS MSLDIIGTST ILDKSLLRWD WYSNSLAAIG VSQTVFPFIS 420
421 SSLCISPRYM FVVNSETVSV GSFLMVSEQL QMLSERYGFF DSIKFGSYCV SNLSIFPKLL 480
481 LEKTSVINLI MALYVKLLKS LARDFPARSP FEATSQKTND YELEVQHLFT WTCELYSENF 540
541 N
|
| Detection Method: |  |
| Confidence: | 45.39794 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 2.77599521858855 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.52062758665339 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.6726520555114 | bayes_pls_golite062009 |
| protein binding | 1.61720914342874 | bayes_pls_golite062009 |
| binding | 1.40353148474598 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.734230328744066 | bayes_pls_golite062009 |
| nucleic acid binding | 0.110806113669931 | bayes_pls_golite062009 |
|
Region A: Residues: [542-694] |
1 11 21 31 41 51
| | | | | |
1 TVISSFIIAN SLGILPEIIE QIIPVFTRVG KVYVVLEALF DLILSQRFTN PSPQLQHHIL 60
61 NYLNDCKRLQ DMDKLIPCIE YQSLDLDFIT KFSRSKGLFD SLCYVSIYAF NDYSIPLVQF 120
121 LNLLKSDIDS PSEETSINVE KGFHFLLYSL TGM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [695-811] |
1 11 21 31 41 51
| | | | | |
1 KYPLGHSNNI NDAYVVIHTL LKVIFSVVPL PFDVPVDNSV DFPYLRLFLE KHADDFFRCL 60
61 EVAFDYPYFS LEKVTIAKKL LDTVNRQWIL ECISQLYEKK KSVSQSYYIF VSHVTAN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [812-1169] |
1 11 21 31 41 51
| | | | | |
1 YSNQLLFSQS FYQGILDGLC NIDVPDDKRE VVEAAIEELL TVYEHFDIAT TLLSCWDHQL 60
61 YQVILHISFK CGRYEDYIEA ILALWKQKGQ KHSFVSESSE ALISLVFNNL QTINRFPGHR 120
121 ERYVSTLISH CGDLFAINHV CFVRNSLKYL LDDFTKVITK TFSIKSIRLQ FLSLIIYEIT 180
181 YEQLSSWYRE RTILSFLELV SFDQGDVKML ELLRLHPKLV RLQGLMEILN KNDCIESCIF 240
241 VYRELAEYKL ALSHVSKYIE KSMSVFDLEK SDDMTSRRIE RLCLHLKTVV PLFEQCTKEV 300
301 SAEDVTNFWL ELVFTLLLVY IKLSLKGSIN SQITFKDFQQ ELSLCIENLL DSFLSKTN
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1xi4A |
| Description: | Clathrin D6 Coat |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1170-1272] |
1 11 21 31 41 51
| | | | | |
1 SYKIALNTVL VRICEEASRN EHSDQYLRKL LLKLITDLYI NHDITKECFL LWDMKQFYEI 60
61 RSTLLQNASG VLVEDPKLQK NAKGQYTSKL KVYFSGLIER EDL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.839 | 0.002 | protein ubiquitination | a.130.1 | Chorismate mutase II |
