YRC Public Data Repository - Protein Structure Prediction

Protein:	swi1
Organism:	Schizosaccharomyces pombe
Length:	971 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swi1.

Description	E-value	Query Range	Subject Range
gi\|11282504, gi\|... - gi\|5002707\|emb\|CAB44362.1\| mating-type switching protein [Schizosaccharomyces pombe], pir\|\|T43656 ma...	1169.0	[0..1]	[971..1]
TOF1_MAGO7 - Topoisomerase 1-associated factor 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)... TOF1_MAGGR - Topoisomerase 1-associated factor 1 OS=Magnaporthe grisea GN=TOF1 PE=3 SV=1	973.0	[0..2]	[949..14]
TOF1_NEUCR - Topoisomerase 1-associated factor 1 OS=Neurospora crassa GN=tof-1 PE=3 SV=1 TOF1_NEUCR - Topoisomerase 1-associated factor 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.7...	968.0	[0..2]	[949..14]
gi\|46124873, gi\|... - gi\|46124873\|ref\|XP_386990.1\| hypothetical protein FG06814.1 [Gibberella zeae PH-1], gi\|42553903\|gb\|E...	947.0	[0..2]	[941..14]
gi\|5305385 - gi\|5305385\|gb\|AAD41625.1\|AF072683_1 drug resistance protein MdrA [Aspergillus nidulans]	865.0	[0..2]	[951..16]
gi\|40742463, gi\|... - gi\|67541687\|ref\|XP_664611.1\| hypothetical protein AN7007.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	862.0	[0..2]	[951..16]
TOF1_CHAGB - Topoisomerase 1-associated factor 1 OS=Chaetomium globosum GN=TOF1 PE=3 SV=1 TOF1_CHAGB - Topoisomerase 1-associated factor 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962...	851.0	[0..2]	[942..14]
TOF1_ASHGO - Topoisomerase 1-associated factor 1 OS=Ashbya gossypii GN=TOF1 PE=3 SV=1 TOF1_ASHGO - Topoisomerase 1-associated factor 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	824.0	[0..3]	[935..39]
gi\|190409242 - gi\|190409242\|gb\|EDV12507.1\| topoisomerase 1-associated factor 1 [Saccharomyces cerevisiae RM11-1a] TOF1 - Subunit of a replication-pausing checkpoint complex (Tof1p-Mrc1p-Csm3p) that acts at the stalled rep... TOF1_YEAST - Topoisomerase 1-associated factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOF1...	806.0	[0..3]	[935..20]
TOF1_ASPOR - Topoisomerase 1-associated factor 1 OS=Aspergillus oryzae GN=tof1 PE=3 SV=1 TOF1_ASPOR - Topoisomerase 1-associated factor 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tof1 PE=3 ...	800.0	[0..2]	[971..18]

Back

Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELDEVIQGI VSAIGGFDYS DDEKVYVLGD EALACLKDLK RYLQVVDEKY KVWQIRSLLS  60
   61 SLQLVTNDIC PILSDWDKDI TNYRNWRIAL ACVELLVPLT WPLETEHETF RENVDVLYNL 120
  121 RQAQSNYKNS ILSYKKGSVL SAILAVLLKP LSTPAESRTL RDKGIIRIVL LLFRNILQID 180
  181 ELKTKNETII SFAKAHILDL IVTLVSNLDE FEHFDVYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [219-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEIVYNLIRG CKPSALFSDA SLTNSQTELN SLLLKESTQN RYLKRNAHTR HNRFGTMLSV  60
   61 QTEDRRFTIA SQNIKTDGLD ELDSHKRFRK RGTRRKHFDD INKSFFINTE AGTALRNFAV 120
  121 EFLEAGFNPL FQSLLKDLER EDPRVLPIHK MQLLYVQSFF LEFMRFSSKP KKTEEIYSN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [398-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSFGLAASV FDQRALIMHN RLMVESFEMK QWSTFQASML SMTQLLFTLR SMTLCSSEIY  60
   61 QRIADNLLSN IFYQEEILLL VYSALKHFKT QSFGYLDAIT ELTIVLLKEL EKFSSAKQYL 120
  121 YVKKRRRNQK SVDSNVLESD EDEESSLINA NAAVEDR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [555-664]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFDFGRYESR YCDNGCIDSF VLFLQCYQDL DSKQIHRAIS FFYRIFVKQK CHVYLYRLDF  60
   61 LRVLDKMFND HVYFSTTNSA RQDFEQFFVY YMRKLSDALK DVPALFIELP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.941	N/A	N/A	a.118.9	ENTH/VHS domain

Predicted Domain #5

Region A:
Residues: [665-749]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPKLTDTFYY LEYGKSPLFS IHGSRKGPLY ETVPGLSHLE KVAAVVACLI NENKSDLLDE  60
   61 LKVQLNCLIS ERKLITLADE NKYIN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [750-971]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGGNDGERMG KNLKGDTDSF NTALLKDGKF RLLLELCGFE ESDNNIDVQA LWKLPNSVII  60
   61 DELVEHAMLL RRFTDDPPTF EGTKPEDLLV RKQRGNVRLP SSSEGETSDE EIEFEADDPI 120
  121 TFANRREALN KITDRKRKKM KTNETIIDHT TRKKKENHLR SAKYIVDSDD DSETDIAFFQ 180
  181 SEAALREKNA QKASALFKRI DDLEMEGKLQ EIEQLSENSS SD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits