| Protein: | arm1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 811 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arm1.
| Description | E-value | Query Range |
Subject Range |
|
|
315.0 | [0..1] | [571..695] |
|
|
305.0 | [0..1] | [671..38] |
|
|
303.0 | [0..1] | [671..38] |
|
|
301.0 | [0..1] | [547..496] |
|
|
298.0 | [0..2] | [543..105] |
|
|
292.0 | [0..1] | [671..38] |
|
Region A: Residues: [1-332] |
1 11 21 31 41 51
| | | | | |
1 MRRSGSKEST IVYSALSLAQ AGRGPEALAL LEPLKSTPIN SLELLDIIQA VYDDQKKGEE 60
61 SFVFWEKFLQ TYGKQEKNLL AYFKASIRIK SLSHQRKAAV ELQKNFPSRK HTLWVISSLY 120
121 LLSKKSENEV EQRLLKALAE KTAKLIFEKP TGYIDSCEEF HLYLDVLLLV GDKDRALDAL 180
181 IHQDADRFVD ADADLLLRKL ELLASCARWD SLFTFSLSLF QTGNTDWKVC KALLDSASND 240
241 DSKLVPLKDC ILKALSTSST KRNLHLLWIE ASARFFPEEH ESALLGYIKK LYMKPIVFED 300
301 LRPYLLKLNV DAQHRLLDAF KLADLGESNE SQ
|
| Detection Method: |  |
| Confidence: | 46.0 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.93197588899451 | bayes_pls_golite062009 |
| protein binding | 1.83529176977066 | bayes_pls_golite062009 |
| procollagen-proline 4-dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| procollagen-proline dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| peptidyl-proline dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| peptidyl-proline 4-dioxygenase activity | 0.482467028485988 | bayes_pls_golite062009 |
| signal sequence binding | 0.37451389163924 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.370543377804206 | bayes_pls_golite062009 |
| acetyltransferase activity | 0.246297460720215 | bayes_pls_golite062009 |
| transferase activity | 0.127854220687373 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.111824723419204 | bayes_pls_golite062009 |
|
Region A: Residues: [333-463] |
1 11 21 31 41 51
| | | | | |
1 KVDKLYAEVL LLKIHFLLFE SFTAESVVDY VRRCFVAFEK GLSLSKGLLP TDFTHGYEAL 60
61 LLAVHSLIYM WEGNKDLKPA EKQALIFDAI CLLEKGITYS QHNFHLKLPL IRLYLLLDGG 120
121 FPAAAKVYDT M
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1ya0A |
| Description: | Crystal structure of the N-terminal domain of human SMG7 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [464-519] |
1 11 21 31 41 51
| | | | | |
1 SIKQIQNDTL DHYLLTRATT YYPSSVTSHY INSSLKIYGS NEFETPEMIS MAYEDG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [520-619] |
1 11 21 31 41 51
| | | | | |
1 AYSQIEDMRN FRSRLDHSTW KSISLVERAR IHYLTAFKPP KQYLPKCSSP KDNRDLKVFA 60
61 DYGSDKLPTV EESLRNSPKP DTLWIHLTVI GHSLVQDSIV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [620-811] |
1 11 21 31 41 51
| | | | | |
1 NGDFEKAVLS AKEMEVLCEN NDLSKQLTSE EIVHMKLLIQ LGLLSVKVKN GDYENSSFET 60
61 IENLIESFDY ENSTPLSQLT KYTEIINDLI TCLNSFLYHV SATKKKEFTR QYQLLKNISS 120
121 NKLGSISGIT KHKKKAARKY VSELLSNSWL SNLSETQVPY DPKFAKQVGE GMIDSYIQTT 180
181 DAVSKLPKFV KF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
