| Protein: | SPCC417.09c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 767 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC417.09c.
| Description | E-value | Query Range |
Subject Range |
|
|
265.0 | [0..50] | [764..6] |
|
|
261.0 | [0..92] | [748..19] |
|
|
260.0 | [0..91] | [744..4] |
|
|
259.0 | [0..91] | [744..4] |
|
|
258.0 | [0..116] | [764..39] |
|
|
258.0 | [0..103] | [757..6] |
|
|
257.0 | [0..109] | [741..10] |
|
|
254.0 | [0..64] | [761..17] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MHARMQPHED RSRSGMSRSE AMELEDQLEE EERGGNVVVG SSSANANAST AETGKKSAGG 60
61 SKPKRRRGER IPPSKRIRKA IAYVNKYASG CFGRVERRLV CTRSIS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [107-222] |
1 11 21 31 41 51
| | | | | |
1 RHSNQKLLDF CVECKKHKIK CVGNFPCGRC LKKGLECVIE TPPRLLMNKD EISLNLQRLS 60
61 HMETILSKLM PSMSLDLPSL EAKIAELSES LQTYPDKVLT DIELGSYQQV TLNETQ
|
| Detection Method: | |
| Confidence: | 2.21 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.80191339934741 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.50774349911815 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [223-280] |
1 11 21 31 41 51
| | | | | |
1 TYYEDAGSNE SFVARVHEII CQGREFQVQH KLTNKGNKTF EDILDPADNT VASLIHAL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [281-464] |
1 11 21 31 41 51
| | | | | |
1 PPKDITFYLL MTFWQFSSDN NHFYYNTKLF AAKVHHLFDD PTSFQSKDGG FVCMLLLSMA 60
61 MGSLFSYIRH PEFLSDENHD RWTYPGSQFY QNAKLLFPKV ISESSLETVQ SFFLAGMYLS 120
121 PTLAHEVVYM YFGIAMRAAV ANGMHKKSAN AQFSGDVAEL RKRLFWSVYC MERKIGISLG 180
181 RPES
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [465-565] |
1 11 21 31 41 51
| | | | | |
1 LVRSEIDIHF PEYRESLDSQ NFIASFRTFT LAIKISLLTN KVYDMWYSSL HGKANLKAAT 60
61 IKEIVNEIEA WRQQLSPDLE IQNIGPDSRS YRGIVHLHLA Y
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [566-767] |
1 11 21 31 41 51
| | | | | |
1 HIVRIAMGRP FLLHRLRERT MNSKTDEGAR LLTDKLISYC YSSALHIVDL LVLLRMHKFL 60
61 SVYSFMDYHS CHAASFIILV HLLINPSEQT IEQLNTAIDI LNFVTDRFPL LKGSTDVITN 120
121 LRAFAEQSEV YQSRLNATEP AYSTQVPFFP RDADYHNQIN LQNLWNDENI NASLEALFND 180
181 AKGFGFLLPA DNFIFPSDDG DM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
