YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP8B7.23
Organism:	Schizosaccharomyces pombe
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP8B7.23.

Description	E-value	Query Range	Subject Range
gi\|85080459 - gi\|85080459\|ref\|XP_956545.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32405156, gi\|... - gi\|32405156\|ref\|XP_323191.1\| hypothetical protein [Neurospora crassa], gi\|28917613\|gb\|EAA27309.1\| hy...	380.0	[0..17]	[649..2]
gi\|42547271, gi\|... - gi\|46136745\|ref\|XP_390064.1\| hypothetical protein FG09888.1 [Gibberella zeae PH-1], gi\|42547271\|gb\|E... gi\|116090841 - gi\|116090841\|gb\|ABJ56002.1\| RING-15 protein [Gibberella zeae]	372.0	[0..13]	[646..3]
gi\|38102496, gi\|... - gi\|39973731\|ref\|XP_368256.1\| hypothetical protein MGG_00988 [Magnaporthe grisea 70-15], gb\|EAA49330....	346.0	[0..17]	[649..2]
gi\|44983698, gi\|... - gi\|45190719\|ref\|NP_984973.1\| AER113Wp [Ashbya gossypii ATCC 10895], gi\|44983698\|gb\|AAS52797.1\| AER11... gi\|44983698 - gi\|44983698\|gb\|AAS52797.1\| AER113Wp [Ashbya gossypii ATCC 10895]	333.0	[0..36]	[671..55]
gi\|116201593, gi... - gi\|88177199\|gb\|EAQ84667.1\| hypothetical protein CHGG_08681 [Chaetomium globosum CBS 148.51], gi\|1162...	328.0	[0..11]	[648..3]
gi\|18377743, gi\|... - gi\|27754738\|gb\|AAO22812.1\| putative RING zinc finger protein [Arabidopsis thaliana], gi\|22331355\|ref...	328.0	[0..25]	[668..52]
MAG2_YEAST - RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG2 PE=1 SV=1 MAG2 - Cytoplasmic protein of unknown function; induced in response to mycotoxin patulin; ubiquitinated pro...	320.0	[0..14]	[654..14]
gi\|40675653, gi\|... - gi\|45361621\|ref\|NP_989388.1\| ring finger protein 10 [Xenopus (Silurana) tropicalis], gi\|40675653\|gb\|...	300.0	[0..6]	[609..4]
gi\|114195908, gi... - gi\|115388637\|ref\|XP_001211824.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	297.0	[0..6]	[655..2]
orf19.5676, orf1... - orf19.5676 CGDID:CAL0000719 Assembly 19, Contig19-10231 (66936, 65125) CDS, reverse complemented, tr... gi\|68485453, gi\|... - gi\|68485548\|ref\|XP_713357.1\| hypothetical protein CaO19.5676 [Candida albicans SC5314], gi\|68485453\|...	291.0	[0..57]	[642..16]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNGEKSALG EMPSNSNSSS KLNAKSPNFI PSSSNIPRSS AKTKEHSADR KPHRNSEKKT  60
   61 QGMPRKNQQL ASSERKTKNK KRLEKQSSAI ADSIGESLDD PQTVYDEHLF DILSARTNKR 120
  121 GQINLNHLLN FQFTPRTNSN AFSAPPRRSR GYNTYGQGSG HHPMDKSRYV NANYRFVVSP 180
  181 IGDYQSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLDPDSPVKW EDVWQVLCSS DFQLAACPFC LEEKPVAARM SRCGHVYCFS CLLRFVETPT  60
   61 AAEVKAAETS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1rmdA
Description:	RAG1 DIMERIZATION DOMAIN
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [258-587]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTKIVKCGHR SCPICWDSIR LRDVHPIRWV EDKEFQKLEE GKSVCLRLYQ RNNGSILAFP  60
   61 RSCRSFALDG SFHSDEIPNF TMSGAAYARI IIGSHDYMVQ QHLLEIEQLQ QIAAEDISLY 120
  121 GSADTYYERI TQILLDRISS LSESVNEQNI KSLQTDIDNL CLQSNSLKQL SEVDDLNDVS 180
  181 GSEIADAYLF YQPFAHSHIY LSPLDIRILK SAFGSYENFP DELVPRVERI SSGHLVNSEL 240
  241 RQRFKYMAHL PEGCEVAFIE CDWSKIIPKE VLLTFKSEIS KRRKQRKAQE MREERYRQRA 300
  301 ERDTEEQIYS ELNMQRPVPK TVVHEDPAEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [588-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPTLGSHHQF ESTDEVNTDE STLSTAKTVW GTRALANIQN DTDDQDDLDG WKVDWDKVAQ  60
   61 LSAPSKNSKN KKKKKLVLLS TGAAHR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.308	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits