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Protein Overview: gi|18377743, gi|...

General Information:
Name(s) found: gi|27754738 [NCBI NR]
gi|22331355 [NCBI NR]
gi|18377743 [NCBI NR]
gi|11994306 [NCBI NR]
Description(s) found:
Found 14 descriptions.
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  • gi|27754738|gb|AAO22812.1| putative RING zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22331355|ref|NP_189307.2| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18377743|gb|AAL67021.1| putative RING zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11994306|dbj|BAB01736.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 772 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS  60
   61 ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS PPNADKRDHF RYDGRRNRSR 120
  121 GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR 180
  181 GPPPPQRRQQ YKGRPFNKDL FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP 240
  241 SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL 300
  301 YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD 360
  361 VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL EQRKLYWNEH KLSIYSKVCT 420
  421 TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC 480
  481 DNDLGHPLED QDAPSSSSCN GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK 540
  541 CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP 600
  601 PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS 660
  661 LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS PNLNNEPTNV QSSSSSSEVS 720
  721 NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..221] PSI-BLAST 11.69897 No description for 1y0fB was found.
    2 View Details [222..343] PSI-BLAST 17.69897 RAG1 DIMERIZATION DOMAIN
    3 View Details [344..658] PSI-BLAST 11.69897 Heavy meromyosin subfragment
    4 View Details [659..772] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle