| Protein: | set1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 920 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for set1.
| Description | E-value | Query Range |
Subject Range |
|
|
304.0 | [0..5] | [920..134] |
|
|
291.0 | [0..16] | [920..178] |
|
|
285.0 | [0..16] | [920..163] |
|
|
280.0 | [0..7] | [920..318] |
|
|
278.0 | [0..32] | [920..108] |
|
|
278.0 | [0..360] | [919..1749] |
|
|
278.0 | [0..360] | [919..1749] |
|
|
277.0 | [0..340] | [903..177] |
|
Region A: Residues: [1-285] |
1 11 21 31 41 51
| | | | | |
1 MDFNTSTRSK SQPVQRNNYK VLYDPELGIK ENLGRKIIYR FNGVSKPPLV VRDPRLKNPI 60
61 YARGIPKSGR PFLKSLQTIN YDYNENSLGP EPPTQVFVSN ISPLVTSEQL RYHFKSFGEV 120
121 FDLDLKLNPY TGTSLGLCCI SFDKRSSISV AAHSAKIAVQ QANGLRFSGK PLSVVLDRDG 180
181 SLCEEAFKKA LNAVEKQFQE ETLQKQRFER EDESSRQKLS AAMNEDIPPW RQPSKNSQTL 240
241 SNGDLQHSKV QNVDQKSGFL TSSETDVPKN INDYIYLLID DRFVP
|
| Detection Method: |  |
| Confidence: | 42.39794 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 4.03831655839461 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| nucleic acid binding | 3.49140899351099 | bayes_pls_golite062009 |
| RNA binding | 2.47430823231895 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 1.45281129851941 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.44189759422835 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.35024639492346 | bayes_pls_golite062009 |
| mRNA binding | 1.30169099150772 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| DNA binding | 0.563753238006617 | bayes_pls_golite062009 |
| transcription regulator activity | 0.400831329848221 | bayes_pls_golite062009 |
| structural molecule activity | 0.347575413104581 | bayes_pls_golite062009 |
| 0.269380373063071 | bayes_pls_golite062009 | |
| cytoskeletal protein binding | 0.220812525173636 | bayes_pls_golite062009 |
|
Region A: Residues: [286-363] |
1 11 21 31 41 51
| | | | | |
1 PDRVYYTDIK HHFRKFLYEK IYMNKDGFYI TFNNYREASN CYRALDRTYV QNCRIKLKFH 60
61 DIPSRTKEDG KKSAVRRV
|
| Detection Method: | |
| Confidence: | 5.221849 |
| Match: | 2go9A |
| Description: | No description for 2go9A was found. |
|
Region A: Residues: [364-583] |
1 11 21 31 41 51
| | | | | |
1 VLPPEEAYAE ATSVVLRDLE AALLRDVKSK IIGPAIFKYL HSMPKPSVKE ELQENLLVSS 60
61 TSVPDVPLKI ESTVGKLPSL PKFKKRVDSS KMNLSAGSKT KSKLQRRRRR RHEARPLHYQ 120
121 LNQMYNSSAS EAESDQELLL SSGDERVERG KIGSIKSVKS DEATPVFSDT SDENDKFHRF 180
181 RTKSKISKKK YEKMEVDYTS SSETESDASI LSPSAAIPKS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [584-920] |
1 11 21 31 41 51
| | | | | |
1 GSAIKDELIS PKKEIDEVLA LAPKWRINEF DETGSVYYGA LPYNYPEDDV LLDLDGLQYL 60
61 VKNDEDYSYL QEALKDEPLM DINDPNFWAY ERKSCKFKNG DVKYGDTAIL PEPKGYFRSN 120
121 TSGSAKSEGY YIIPTTEKSL YLPLRNRSTI DTISHSTSRI TSRMNRVNNR RLAAGVEKSQ 180
181 LPAEADLLRF NALKARKKQL HFGPSRIHTL GLFAMENIDK NDMVIEYIGE IIRQRVADNR 240
241 EKNYVREGIG DSYLFRIDED VIVDATKKGN IARFINHSCA PNCIARIIRV EGKRKIVIYA 300
301 DRDIMHGEEL TYDYKFPEEA DKIPCLCGAP TCRGYLN
|
| Detection Method: | |
| Confidence: | 54.39794 |
| Match: | 2r3aA |
| Description: | No description for 2r3aA was found. |
