YRC Public Data Repository - Protein Structure Prediction

Protein:	rsc1
Organism:	Schizosaccharomyces pombe
Length:	803 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsc1.

Description	E-value	Query Range	Subject Range
gi\|42553738, gi\|... - gi\|46127173\|ref\|XP_388140.1\| hypothetical protein FG07964.1 [Gibberella zeae PH-1], gi\|42553738\|gb\|E...	527.0	[0..30]	[799..115]
gi\|49092248, gi\|... - gi\|67525981\|ref\|XP_661052.1\| hypothetical protein AN3448.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	473.0	[0..16]	[777..37]
gi\|116179512, gi... - gi\|88184681\|gb\|EAQ92149.1\| hypothetical protein CHGG_00384 [Chaetomium globosum CBS 148.51], gi\|1161...	469.0	[0..14]	[796..118]
RSC1 - Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-s... RSC1_YEAST - Chromatin structure-remodeling complex subunit RSC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 ...	466.0	[0..8]	[684..3]
gi\|85093870 - gi\|85093870\|ref\|XP_959775.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32421373, gi\|... - gi\|32421373\|ref\|XP_331130.1\| hypothetical protein [Neurospora crassa], gi\|28921229\|gb\|EAA30539.1\| hy...	449.0	[0..14]	[729..180]
gi\|44980883, gi\|... - gi\|45185225\|ref\|NP_982942.1\| ABL005Cp [Ashbya gossypii ATCC 10895], gi\|44980883\|gb\|AAS50766.1\| ABL00... gi\|44980883 - gi\|44980883\|gb\|AAS50766.1\| ABL005Cp [Ashbya gossypii ATCC 10895]	444.0	[0..14]	[682..3]
gi\|115402977, gi... - gi\|115402977\|ref\|XP_001217565.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	433.0	[0..16]	[774..38]
gi\|71000727, gi\|... - gi\|71000727\|ref\|XP_755045.1\| RSC complex subunit (RSC1) [Aspergillus fumigatus Af293], gi\|66852682\|g...	433.0	[0..16]	[790..38]
gi\|27803071 - gi\|27803071\|emb\|CAD60774.1\| unnamed protein product [Podospora anserina]	429.0	[0..14]	[717..139]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKIRPSAD DKKLQRVLYF FLERVRAAKD VSGQLLSPLI DNASVDTASV SPSSNGRPTT  60
   61 LKSIQSKIDE FQYHDFSEFV SDLAYLFINV KALYEGTQTY SFVQALEEFC IQQLRTFQQQ 120
  121 GYIPVITWPN TDSPSATTSS PISRNPEYSV SPPNGSKFVK NEDEAYDSDL YVEEEDSDVK 180
  181 GRSMVGRDGR YKSEDLKRRK LQPSSKPLSS LEARAKVIMR QVRRYRDGSG RQLFAPFERL 240
  241 PDPRMFPEYY QAIEQPMALE VIQKKLSKHR YETIEQFVDD FNLMFDNAKS FNDPSSQVYR 300
  301 DADFLKNYLA DVLRLEAGKL DSEFFNYETD SRASP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.154902
Match:	1eqfA
Description:	TAFII250 double bromodomain module
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [336-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLPKNDIQPA VSIDGTLLNV GDWVLIRNPA DSSKPIVSQI YRIWKSDDDI NYVTVCWYLR  60
   61 PEQTVHRADA VFYENEVFKT SLYRDHPVSE IVGRCFVMYI TRYIRGRPKG IRSTPVFVCE 120
  121 SRYNDDTKQF SKIKSWKACM PQEVSGSEYE MILFDRPITL TKVASPLLHL LASKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1w4sA
Description:	Crystal structure of the proximal BAH domain of polybromo
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [511-803]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGLPSPATTD SNTHMLPSQG SLLPPSSISE TKSFSTKAST PLSTDDIATP LSSAPNPPSV  60
   61 MPTYARKTSS HSERSSHSSY HNSSHVPTAA FNSPIMRTST KSTSPIPARP FYAQSGSLQS 120
  121 LNTTQHSHQI SGGHSGRMNV PYAKLSYTSH NGRHGGSNGN ISGAKTPMTN YTINSMPSLP 180
  181 VFPPAFIVPG THQKLDESSP VPGIDDVTVI NTETAKMLDK DEHQNVLWYT VPPLDPIPLE 240
  241 NRNGSLTHSV EYVLYKKSKG SQVITEKARS NELSREAKFE NLVASLSDAL IPP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits