YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC19G12.08
Organism:	Schizosaccharomyces pombe
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC19G12.08.

Description	E-value	Query Range	Subject Range
gi\|159131702 - gi\|159131702\|gb\|EDP56815.1\| fatty acid hydroxylase, putative [Aspergillus fumigatus A1163] gi\|70996386, gi\|... - gi\|70996386\|ref\|XP_752948.1\| fatty acid hydroxylase [Aspergillus fumigatus Af293], gi\|66850583\|gb\|EA...	361.0	[0..3]	[333..153]
gi\|49642276 - gi\|49642276\|emb\|CAH00238.1\| KLLA0D01639p [Kluyveromyces lactis] gi\|50306337, gi\|... - gi\|50306337\|ref\|XP_453142.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642276\|emb\|CAH0023...	356.0	[0..2]	[331..17]
gi\|46121571, gi\|... - gi\|46121571\|ref\|XP_385340.1\| hypothetical protein FG05164.1 [Gibberella zeae PH-1], gi\|42551605\|gb\|E...	354.0	[0..3]	[333..17]
gi\|39943818, gi\|... - gi\|39943818\|ref\|XP_361446.1\| hypothetical protein MGG_03920 [Magnaporthe grisea 70-15], gb\|EAA50161....	354.0	[0..2]	[333..16]
gi\|151945979 - gi\|151945979\|gb\|EDN64211.1\| desaturase [Saccharomyces cerevisiae YJM789] gi\|190408497 - gi\|190408497\|gb\|EDV11762.1\| desaturase [Saccharomyces cerevisiae RM11-1a] SCS7_YEAST - Ceramide very long chain fatty acid hydroxylase SCS7 OS=Saccharomyces cerevisiae (strain ATCC 204508... SCS7 - Sphingolipid alpha-hydroxylase, functions in the alpha-hydroxylation of sphingolipid-associated very...	353.0	[0..3]	[331..20]
gi\|44979987, gi\|... - gi\|45184641\|ref\|NP_982359.1\| AAL183Wp [Ashbya gossypii ATCC 10895], gi\|44979987\|gb\|AAS50183.1\| AAL18... gi\|44979987 - gi\|44979987\|gb\|AAS50183.1\| AAL183Wp [Ashbya gossypii ATCC 10895]	350.0	[0..2]	[331..16]
gi\|28916905, gi\|... - gi\|32404274\|ref\|XP_322750.1\| hypothetical protein [Neurospora crassa], gi\|28916905\|gb\|EAA26643.1\| in... gi\|85076098 - gi\|85076098\|ref\|XP_955879.1\| inositolphosphorylceramide-B C-26 hydroxylase [Neurospora crassa OR74A]	346.0	[0..3]	[333..17]
gi\|114192581, gi... - gi\|115397597\|ref\|XP_001214390.1\| inositolphosphorylceramide-B C-26 hydroxylase [Aspergillus terreus ...	346.0	[0..3]	[333..17]
gi\|88179489, gi\|... - gi\|88179489\|gb\|EAQ86957.1\| hypothetical protein CHGG_08210 [Chaetomium globosum CBS 148.51], gi\|1162...	344.0	[0..2]	[333..16]
gi\|83765943 - gi\|83765943\|dbj\|BAE56086.1\| unnamed protein product [Aspergillus oryzae] gi\|169767234 - gi\|169767234\|ref\|XP_001818088.1\| hypothetical protein [Aspergillus oryzae RIB40]	343.0	[0..3]	[333..17]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVTSEKCV ILSDGTEYDV TNYLVANKDA ADLLRRYHRQ EVADILNATS KSKHSEAVVE  60
   61 ILKSAKVPLK NKEFSDLVDQ NIGVGYGNEF IVKPTDLDKD FEKNHFLDLK KPLLPQILFG 120
  121 NIKKDVYLDQ VHRPRHYRGS GSAPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1soxA
Description:	Sulfite oxidase, C-terminal domain; Sulfite oxidase, N-terminal domain; Sulfite oxidase, middle catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.29500061324594	bayes_pls_golite062009
sphingosine hydroxylase activity	2.09152903381389	bayes_pls_golite062009
binding	1.13937274704645	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.05227276400356	bayes_pls_golite062009
cytochrome-c oxidase activity	0.973006556081137	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	0.973006556081137	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	0.973006556081137	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.888859895539844	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.808453086600089	bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	0.754105021273961	bayes_pls_golite062009
heme-copper terminal oxidase activity	0.734823847983524	bayes_pls_golite062009
cation transmembrane transporter activity	0.602390039366203	bayes_pls_golite062009
oxidoreductase activity	0.583561246970036	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.493634303942328	bayes_pls_golite062009
protein binding	0.268795825133297	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.0873984825495362	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [146-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGNFLEPLTK TPWYMIPLIW VPCVTYGFLY ACTGIPFSVA ITFFIIGLFT WTLVEYTMHR  60
   61 FLFHLDEYTP DHPIFLTMHF AFHGCHHFLP ADKYRLVMPP ALFLIFATPW YHFIQLVLPH 120
  121 YIGVAGFSGA ILGYVFYDLT HYFLHHRRMP NAYLTDLKTW HLDHHYKDYK SAYGITSWFW 180
  181 DRVFGTEGPL FNEQGKISTK AK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.136677
Match:	PF04116.4
Description:	No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: