YRC Public Data Repository - Protein Structure Prediction

Protein:	ssr3
Organism:	Schizosaccharomyces pombe
Length:	425 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssr3.

Description	E-value	Query Range	Subject Range
gi\|50806703 - gi\|50806703\|ref\|XP_424488.1\| PREDICTED: similar to SMARCD1 protein [Gallus gallus]	594.0	[0..17]	[421..344]
gi\|109096584 - gi\|109096584\|ref\|XP_001111244.1\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-depen...	582.0	[0..23]	[421..247]
gi\|114644829 - gi\|114644829\|ref\|XP_001155833.1\| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regula...	582.0	[0..23]	[421..247]
gi\|73996696 - gi\|73996696\|ref\|XP_543674.2\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent...	575.0	[0..23]	[421..193]
gi\|50418293 - gi\|50418293\|gb\|AAH77955.1\| Smarcd1 protein [Xenopus laevis]	572.0	[0..23]	[421..121]
gi\|89267384 - gi\|89267384\|emb\|CAJ82676.1\| SWI/SNF related, matrix associated, actin dependent regulator of chromat...	572.0	[0..2]	[421..92]
gi\|47220711 - gi\|47220711\|emb\|CAG11780.1\| unnamed protein product [Tetraodon nigroviridis]	569.0	[0..2]	[421..116]
gi\|182889574, gi... - gi\|46249729\|gb\|AAH68407.1\| Smarcd1 protein [Danio rerio], gi\|38198635\|ref\|NP_938172.1\| SWI/SNF relat...	569.0	[0..2]	[421..97]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNSRLPEN GVQSGNGEDA ELKKSMRIIE REIPDSLLEK IPEAEDYIAL QDLERKLDSL  60
   61 IVRKRFDLQD SLSRNSHKTR ILRMYIHSTV ANQSWQQKGE NQENNSGDIN SLPIPEWTLH 120
  121 IEGRLLVNPD DEDDKAFELA PFTNFFRKIA IQILRSDDLY PSGNYVEWNK LPDNSNT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNGITVTRKG DQSVDVKIML YPEEHPERYK LSKAFANILG IREGTRPDIV SYLWQYIKFH  60
   61 RLQDMEEKRL INCDKALRDL FEADRLYFPR IPELMNRFLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1uhrA
Description:	Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [278-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIDPIVIPYT INVSEHTVEK VTIFDIRINT EDPRHSQIRS FLATMMSQDK IRSIDDKLTE  60
   61 LIQAITYSQS KYDFM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [353-425]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKFSESPIEF INEWIESQSR DLEIVLDGTN MNYAEKRSAD YYQQPWVHES AFHYLNLLNS  60
   61 KKQQSVLNAS AKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.827	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits