| Protein: | ssr3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 425 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssr3.
| Description | E-value | Query Range |
Subject Range |
|
|
594.0 | [0..17] | [421..344] |
|
|
582.0 | [0..23] | [421..247] |
|
|
582.0 | [0..23] | [421..247] |
|
|
575.0 | [0..23] | [421..193] |
|
|
572.0 | [0..23] | [421..121] |
|
|
572.0 | [0..2] | [421..92] |
|
|
569.0 | [0..2] | [421..116] |
|
|
569.0 | [0..2] | [421..97] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MSNNSRLPEN GVQSGNGEDA ELKKSMRIIE REIPDSLLEK IPEAEDYIAL QDLERKLDSL 60
61 IVRKRFDLQD SLSRNSHKTR ILRMYIHSTV ANQSWQQKGE NQENNSGDIN SLPIPEWTLH 120
121 IEGRLLVNPD DEDDKAFELA PFTNFFRKIA IQILRSDDLY PSGNYVEWNK LPDNSNT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [178-277] |
1 11 21 31 41 51
| | | | | |
1 SNGITVTRKG DQSVDVKIML YPEEHPERYK LSKAFANILG IREGTRPDIV SYLWQYIKFH 60
61 RLQDMEEKRL INCDKALRDL FEADRLYFPR IPELMNRFLE
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 1uhrA |
| Description: | Solution structure of the SWIB domain of mouse BRG1-associated factor 60a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [278-352] |
1 11 21 31 41 51
| | | | | |
1 PIDPIVIPYT INVSEHTVEK VTIFDIRINT EDPRHSQIRS FLATMMSQDK IRSIDDKLTE 60
61 LIQAITYSQS KYDFM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.656 | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.615 | a.159.2 | FF domain |
| View | Download | 0.591 | d.15.1 | Ubiquitin-like |
| View | Download | 0.548 | d.15.1 | Ubiquitin-like |
| View | Download | 0.522 | a.159.4 | Description not found. |
| View | Download | 0.496 | d.9.2 | Description not found. |
| View | Download | 0.457 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.455 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.445 | d.15.1 | Ubiquitin-like |
|
Region A: Residues: [353-425] |
1 11 21 31 41 51
| | | | | |
1 KKFSESPIEF INEWIESQSR DLEIVLDGTN MNYAEKRSAD YYQQPWVHES AFHYLNLLNS 60
61 KKQQSVLNAS AKK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.827 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.813 | N/A | N/A | a.8.9 | Description not found. |
| View | Download | 0.800 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.712 | N/A | N/A | a.8.9 | Description not found. |
| View | Download | 0.687 | N/A | N/A | a.4.15 | Description not found. |
| View | Download | 0.636 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.619 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.558 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
