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Protein Overview: ssr3

General Information:
Name(s) found: ssr3 / SPAC23G3.10c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • SWI/SNF and RSC complex subunit Ssr3 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    RSC complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    regulation of gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNSRLPEN GVQSGNGEDA ELKKSMRIIE REIPDSLLEK IPEAEDYIAL QDLERKLDSL  60
   61 IVRKRFDLQD SLSRNSHKTR ILRMYIHSTV ANQSWQQKGE NQENNSGDIN SLPIPEWTLH 120
  121 IEGRLLVNPD DEDDKAFELA PFTNFFRKIA IQILRSDDLY PSGNYVEWNK LPDNSNTSNG 180
  181 ITVTRKGDQS VDVKIMLYPE EHPERYKLSK AFANILGIRE GTRPDIVSYL WQYIKFHRLQ 240
  241 DMEEKRLINC DKALRDLFEA DRLYFPRIPE LMNRFLEPID PIVIPYTINV SEHTVEKVTI 300
  301 FDIRINTEDP RHSQIRSFLA TMMSQDKIRS IDDKLTELIQ AITYSQSKYD FMKKFSESPI 360
  361 EFINEWIESQ SRDLEIVLDG TNMNYAEKRS ADYYQQPWVH ESAFHYLNLL NSKKQQSVLN 420
  421 ASAKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..177] MSA 1.078986 View MSA. No confident structure predictions are available.
    2 View Details [178..277] PSI-BLAST 28.69897 Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
    3 View Details [278..352] deduced N/A No confident structure predictions are available.
    4 View Details [353..425] MSA 2.044992 View MSA. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle